From a8c27eaefa6676047a5274aead87f29cfb2fa4c0 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sat, 11 Aug 2018 20:11:31 -0500
Subject: [PATCH] Assert paired end files exist.

---
 workflow/tests/test_convert_reads.py | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/workflow/tests/test_convert_reads.py b/workflow/tests/test_convert_reads.py
index 1067547..52f3fa4 100644
--- a/workflow/tests/test_convert_reads.py
+++ b/workflow/tests/test_convert_reads.py
@@ -15,6 +15,5 @@ def test_convert_reads_singleend():
 
 @pytest.mark.integration
 def test_map_qc_pairedend():
-    # Do the same thing for paired end data
-    # Also check that bedpe exists
-    pass
+    assert os.path.exists(os.path.join(test_output_path, 'ENCFF293YFE_val_2ENCFF330MCZ_val_1.filt.nodup.tagAlign.gz'))
+    assert os.path.exists(os.path.join(test_output_path, 'ENCFF293YFE_val_2ENCFF330MCZ_val_1.filt.nodup.bedpe.gz'))
-- 
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