From a79a5aac4868fe67a8191386c2a9bf5e662a7ffc Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 20 Mar 2020 12:15:40 -0500
Subject: [PATCH] Unit test other functions.
---
workflow/tests/plot_profile.bats | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/workflow/tests/plot_profile.bats b/workflow/tests/plot_profile.bats
index 8c435b7..229a0f1 100644
--- a/workflow/tests/plot_profile.bats
+++ b/workflow/tests/plot_profile.bats
@@ -6,3 +6,26 @@ profile_script="./workflow/scripts/plot_profile.sh"
source ${profile_script}
run check_tools
}
+
+@test "Test deeptools present" {
+ source ${profile_script}
+ run check_tools
+}
+
+@test "Test deeptools computeMatrix" {
+ source ${profile_script}
+ run compute_matrix test_data/ENCSR238SGC_pooled.fc_signal.bw /project/shared/bicf_workflow_ref/mouse/GRCm38/gencode.vM20.annotation.gtf
+ FILE=computeMatrix.gz
+ if [[ -f "$FILE" ]]; then
+ echo "$FILE exist"
+ fi
+}
+
+@test "Test deeptools plotProfile" {
+ source ${profile_script}
+ run plot_profile computeMatrix.gz
+ FILE=plotProfile.png
+ if [[ -f "$FILE" ]]; then
+ echo "$FILE exist"
+ fi
+}
--
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