From 9d874ea1d079c94648add34e79c1abdc9338c139 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sat, 5 Jan 2019 07:26:45 -0600
Subject: [PATCH] Add in extension to other functions.
---
workflow/scripts/experiment_qc.py | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/experiment_qc.py b/workflow/scripts/experiment_qc.py
index 1c01012..a5f1c81 100644
--- a/workflow/scripts/experiment_qc.py
+++ b/workflow/scripts/experiment_qc.py
@@ -164,7 +164,7 @@ def main():
design_df = pd.read_csv(design, sep='\t')
# Run correlation
- mbs_filename = generate_read_summary(design_df)
+ mbs_filename = generate_read_summary(design_df, extension)
check_correlation(mbs_filename)
# Run coverage
@@ -177,7 +177,8 @@ def main():
row['sample_id'],
row['control_id'],
row['bam_reads'],
- row['control_reads'])
+ row['control_reads'],
+ extension)
if __name__ == '__main__':
--
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