From 9b00fd0b393bbb4697d7c4af22913b9cdd993d19 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 7 Jan 2019 13:57:59 -0600
Subject: [PATCH] Update staging to be unit, single and multiple.
---
.gitlab-ci.yml | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 93373d2..924c2c6 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -6,7 +6,8 @@ before_script:
stages:
- unit
- - integration
+ - single
+ - multiple
user_configuration:
stage: unit
@@ -15,7 +16,7 @@ user_configuration:
-pytest -m unit --cov=./workflow/scripts
single_end_mouse:
- stage: integration
+ stage: single
script:
- nextflow run workflow/main.nf -resume
- pytest -m singleend
@@ -23,7 +24,7 @@ single_end_mouse:
expire_in: 2 days
paired_end_human:
- stage: integration
+ stage: single
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
- pytest -m pairedend
@@ -31,7 +32,7 @@ paired_end_human:
expire_in: 2 days
single_end_diff:
- stage: integration
+ stage: multiple
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' -resume
- pytest -m singlediff
@@ -39,7 +40,7 @@ single_end_diff:
expire_in: 2 days
paired_end_diff:
- stage: integration
+ stage: multiple
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
- pytest -m paireddiff
--
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