From 98315769e8919a3340671a983b84916148b6181b Mon Sep 17 00:00:00 2001
From: s181706 <jonathan.gesell@utsouthwestern.edu>
Date: Thu, 26 Jul 2018 10:17:48 -0500
Subject: [PATCH] updated all processes to use samtools/1.6
---
workflow/conf/biohpc.config | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index a15c0eb..30067fa 100644
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -13,11 +13,11 @@ process {
cpus = 32
}
$alignReads{
- module = ['python/3.6.1-2-anaconda', 'bwa/intel/0.7.12', 'samtools/intel/1.3']
+ module = ['python/3.6.1-2-anaconda', 'bwa/intel/0.7.12', 'samtools/1.6']
cpus = 32
}
$filterReads{
- module = ['python/3.6.1-2-anaconda', 'samtools/1.4.1', 'sambamba/0.6.6', 'bedtools/2.26.0']
+ module = ['python/3.6.1-2-anaconda', 'samtools/1.6', 'sambamba/0.6.6', 'bedtools/2.26.0']
cpus = 32
}
$experimentQC {
@@ -25,7 +25,7 @@ process {
cpus = 32
}
$convertReads {
- module = ['python/3.6.1-2-anaconda', 'samtools/1.4.1', 'bedtools/2.26.0']
+ module = ['python/3.6.1-2-anaconda', 'samtools/1.6', 'bedtools/2.26.0']
cpus = 32
}
$crossReads {
--
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