From 96c119ec19bb2fdd3347d226d212f034574665d6 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 30 Oct 2017 08:10:23 -0500
Subject: [PATCH] Fix file reference.

---
 workflow/scripts/pool_and_psuedoreplicate.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index f879681..26db98c 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -125,7 +125,7 @@ def self_psuedoreplication(tag_file, prefix, paired):
     # Convert read pairs to reads into standard tagAlign file
 
     for i, index in enumerate([0, 1]):
-        string_index = str(index)
+        string_index = '0' + str(index)
         steps = ['cat %s' % (splits_prefix + string_index)]
         if paired:
             steps.extend([r"""awk 'BEGIN{OFS="\t"}{printf "%s\t%s\t%s\tN\t1000\t%s\n%s\t%s\t%s\tN\t1000\t%s\n",$1,$2,$3,$9,$4,$5,$6,$10}'"""])
-- 
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