From 96c119ec19bb2fdd3347d226d212f034574665d6 Mon Sep 17 00:00:00 2001 From: Venkat Malladi <venkat.malladi@utsouthwestern.edu> Date: Mon, 30 Oct 2017 08:10:23 -0500 Subject: [PATCH] Fix file reference. --- workflow/scripts/pool_and_psuedoreplicate.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py index f879681..26db98c 100644 --- a/workflow/scripts/pool_and_psuedoreplicate.py +++ b/workflow/scripts/pool_and_psuedoreplicate.py @@ -125,7 +125,7 @@ def self_psuedoreplication(tag_file, prefix, paired): # Convert read pairs to reads into standard tagAlign file for i, index in enumerate([0, 1]): - string_index = str(index) + string_index = '0' + str(index) steps = ['cat %s' % (splits_prefix + string_index)] if paired: steps.extend([r"""awk 'BEGIN{OFS="\t"}{printf "%s\t%s\t%s\tN\t1000\t%s\n%s\t%s\t%s\tN\t1000\t%s\n",$1,$2,$3,$9,$4,$5,$6,$10}'"""]) -- GitLab