From 966123353d86e1e15ce3bcfd1df96cc472b84af0 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Thu, 19 Mar 2020 22:23:42 -0500
Subject: [PATCH] testing using bats.
---
.gitlab-ci.yml | 3 ++-
workflow/tests/plot_profile.bats | 9 +--------
2 files changed, 3 insertions(+), 9 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 6782976..0f90138 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -14,7 +14,8 @@ stages:
user_configuration:
stage: unit
script:
- - pytest -m unit
+ - module load singularity/3.0.2
+ - singularity run docker://bats/bats:v1.1.0 --tap workflow/tests/plot_profile.bats
- pytest -m unit --cov=./workflow/scripts
astrocyte:
diff --git a/workflow/tests/plot_profile.bats b/workflow/tests/plot_profile.bats
index 63fd7dd..a1b78a3 100644
--- a/workflow/tests/plot_profile.bats
+++ b/workflow/tests/plot_profile.bats
@@ -1,6 +1,6 @@
#!/opt/bats/libexec/bats-core/ bats
-profile_script="./worflow/scripts/plot_profile.sh"
+profile_script="./workflow/scripts/plot_profile.sh"
setup() {
module load deeptools/2.5.0.1
@@ -9,11 +9,4 @@ setup() {
@test "Test deeptools present" {
source ${profile_script}
run check_tools
- assert_success
-}
-
-@test "Test matrix generation" {
- source ${profile_script}
- run check_tools
- assert_success
}
--
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