From 912cae350732b1d076a64681d0286665300a75ac Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Thu, 15 Mar 2018 16:38:05 -0500
Subject: [PATCH] Fix error in config not quoted varaible
---
workflow/conf/biohpc.config | 12 +++++++++++-
1 file changed, 11 insertions(+), 1 deletion(-)
diff --git a/workflow/conf/biohpc.config b/workflow/conf/biohpc.config
index 4c1099a..1416bcd 100644
--- a/workflow/conf/biohpc.config
+++ b/workflow/conf/biohpc.config
@@ -45,7 +45,7 @@ process {
}
$consensusPeaks {
module = ['python/3.6.1-2-anaconda', 'bedtools/2.26.0']
- cpus = local
+ cpus = 'local'
}
}
@@ -75,3 +75,13 @@ trace {
file = 'pipeline_trace.txt'
fields = 'task_id,native_id,process,name,status,exit,submit,start,complete,duration,realtime,%cpu,%mem,rss'
}
+
+timeline {
+ enabled = true
+ file = 'timeline.html'
+}
+
+report {
+ enabled = true
+ file = 'report.html'
+}
--
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