diff --git a/workflow/tests/test_annotate_peaks.py b/workflow/tests/test_annotate_peaks.py
index 0b0d8f12591e72f7f53d597e97615bd150615918..6fd5c131c2d199d34cb8e2c7a92c7e67aaed5be4 100644
--- a/workflow/tests/test_annotate_peaks.py
+++ b/workflow/tests/test_annotate_peaks.py
@@ -16,7 +16,7 @@ def test_annotate_peaks_singleend():
     assert os.path.exists(os.path.join(test_output_path, 'ENCSR238SGC.chipseeker_upsetplot.pdf'))
     annotation_file = test_output_path + 'ENCSR238SGC.chipseeker_annotation.csv'
     assert os.path.exists(annotation_file)
-    assert utils.count_lines(annotation_file) == 149820
+    assert utils.count_lines(annotation_file) == 152840
 
 
 @pytest.mark.pairedend
diff --git a/workflow/tests/test_overlap_peaks.py b/workflow/tests/test_overlap_peaks.py
index ccbf186aa12798878db6b982a5a5d4574df01461..99d43b87939617c801bad0389f14e2683cde0f82 100644
--- a/workflow/tests/test_overlap_peaks.py
+++ b/workflow/tests/test_overlap_peaks.py
@@ -37,7 +37,7 @@ def test_check_update_design(design_diff):
 def test_overlap_peaks_singleend():
     assert os.path.exists(os.path.join(test_output_path, 'ENCSR238SGC.rejected.narrowPeak'))
     peak_file = test_output_path + 'ENCSR238SGC.replicated.narrowPeak'
-    assert utils.count_lines(peak_file) == 149828
+    assert utils.count_lines(peak_file) == 152848
 
 
 @pytest.mark.pairedend