From 7bbb0bbd038580ac38ebca92748cf3c1f1149ef6 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sat, 11 Aug 2018 20:15:09 -0500
Subject: [PATCH] Add in test cross-correlation.

---
 workflow/tests/test_xcor.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/workflow/tests/test_xcor.py b/workflow/tests/test_xcor.py
index cf48408..87e0304 100644
--- a/workflow/tests/test_xcor.py
+++ b/workflow/tests/test_xcor.py
@@ -20,5 +20,9 @@ def test_convert_reads_singleend():
 
 @pytest.mark.integration
 def test_map_qc_pairedend():
-    # Do the same thing for paired end data
-    pass
+    assert os.path.exists(os.path.join(test_output_path, 'ENCFF582IOZ_val_2ENCFF957SQS_val_1.filt.nodup.tagAlign.15.tagAlign.gz.cc.plot.pdf'))
+    qc_file = os.path.join(test_output_path,"ENCFF582IOZ_val_2ENCFF957SQS_val_1.filt.nodup.tagAlign.15.tagAlign.gz.cc.qc")
+    df_xcor = pd.read_csv(qc_file, sep="\t", header=None)
+    assert df_xcor[2].iloc[0] == '205,410,430'
+    assert df_xcor[8].iloc[0] == 1.060266
+    assert df_xcor[9].iloc[0] == 4.308793
-- 
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