From 785478cea5d5c443b2e0c2ea8644522ba569ffd7 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Wed, 9 Jan 2019 11:46:41 -0600
Subject: [PATCH] Fix number of peaks.
---
workflow/tests/test_annotate_peaks.py | 6 +++---
workflow/tests/test_overlap_peaks.py | 2 +-
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/workflow/tests/test_annotate_peaks.py b/workflow/tests/test_annotate_peaks.py
index 30ff74f..fa5c241 100644
--- a/workflow/tests/test_annotate_peaks.py
+++ b/workflow/tests/test_annotate_peaks.py
@@ -21,8 +21,8 @@ def test_annotate_peaks_singleend():
@pytest.mark.pairedend
def test_annotate_peaks_pairedend():
- assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA..chipseeker_pie.pdf'))
- assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA..chipseeker_upsetplot.pdf'))
- annotation_file = test_output_path + 'ENCSR729LGA..chipseeker_annotation.csv'
+ assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA.chipseeker_pie.pdf'))
+ assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA.chipseeker_upsetplot.pdf'))
+ annotation_file = test_output_path + 'ENCSR729LGA.chipseeker_annotation.csv'
assert os.path.exists(annotation_file)
assert utils.count_lines(annotation_file) == 25391
diff --git a/workflow/tests/test_overlap_peaks.py b/workflow/tests/test_overlap_peaks.py
index 99d43b8..36ed3da 100644
--- a/workflow/tests/test_overlap_peaks.py
+++ b/workflow/tests/test_overlap_peaks.py
@@ -44,4 +44,4 @@ def test_overlap_peaks_singleend():
def test_overlap_peaks_pairedend():
assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA.rejected.narrowPeak'))
peak_file = test_output_path + 'ENCSR729LGA.replicated.narrowPeak'
- assert utils.count_lines(peak_file) == 25655
+ assert utils.count_lines(peak_file) == 25878
--
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