diff --git a/workflow/tests/test_annotate_peaks.py b/workflow/tests/test_annotate_peaks.py
index 30ff74f037e994b8e939314983e964b98eb20c0b..fa5c2411fccd7784d780c5699b2b9de541e84064 100644
--- a/workflow/tests/test_annotate_peaks.py
+++ b/workflow/tests/test_annotate_peaks.py
@@ -21,8 +21,8 @@ def test_annotate_peaks_singleend():
 
 @pytest.mark.pairedend
 def test_annotate_peaks_pairedend():
-    assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA..chipseeker_pie.pdf'))
-    assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA..chipseeker_upsetplot.pdf'))
-    annotation_file = test_output_path + 'ENCSR729LGA..chipseeker_annotation.csv'
+    assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA.chipseeker_pie.pdf'))
+    assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA.chipseeker_upsetplot.pdf'))
+    annotation_file = test_output_path + 'ENCSR729LGA.chipseeker_annotation.csv'
     assert os.path.exists(annotation_file)
     assert utils.count_lines(annotation_file) == 25391
diff --git a/workflow/tests/test_overlap_peaks.py b/workflow/tests/test_overlap_peaks.py
index 99d43b87939617c801bad0389f14e2683cde0f82..36ed3da17e7eb61aa4440ae18527453d19a32df9 100644
--- a/workflow/tests/test_overlap_peaks.py
+++ b/workflow/tests/test_overlap_peaks.py
@@ -44,4 +44,4 @@ def test_overlap_peaks_singleend():
 def test_overlap_peaks_pairedend():
     assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA.rejected.narrowPeak'))
     peak_file = test_output_path + 'ENCSR729LGA.replicated.narrowPeak'
-    assert utils.count_lines(peak_file) == 25655
+    assert utils.count_lines(peak_file) == 25878