From 763931b82fad005837eb5cbf81d00d9961339c1b Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Sun, 19 Nov 2017 10:50:22 -0600
Subject: [PATCH] Remove extra sort from rescaling causing issues.
---
workflow/scripts/utils.py | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/workflow/scripts/utils.py b/workflow/scripts/utils.py
index e9f4a77..a501673 100644
--- a/workflow/scripts/utils.py
+++ b/workflow/scripts/utils.py
@@ -7,6 +7,7 @@ import shlex
import logging
import subprocess
import sys
+import os
logger = logging.getLogger(__name__)
@@ -109,10 +110,12 @@ def rescale_scores(filename, scores_col, new_min=10, new_max=1000):
b = max_score
x = new_min
y = new_max
+
if min_score == max_score: # give all peaks new_min
rescale_formula = "x"
else: # n is the unscaled score from scores_col
rescale_formula = "((n-a)*(y-x)/(b-a))+x"
+
out, err = run_pipe(
[
'cat %s' % (sorted_fn),
@@ -122,4 +125,7 @@ def rescale_scores(filename, scores_col, new_min=10, new_max=1000):
% (scores_col, rescale_formula)
],
rescaled_fn)
+
+ os.remove(sorted_fn)
+
return rescaled_fn
--
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