From 73082a3c923cc5bd66d2a7c0cc88f65fea0bf8cb Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 12 Sep 2017 17:05:19 -0500
Subject: [PATCH] Update name of task and permission.
---
workflow/main.nf | 5 ++---
workflow/scripts/qc_fastq.py | 0
2 files changed, 2 insertions(+), 3 deletions(-)
mode change 100644 => 100755 workflow/scripts/qc_fastq.py
diff --git a/workflow/main.nf b/workflow/main.nf
index 8bf377a..1175c2d 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -15,8 +15,7 @@ Channel
process qc_fastq {
tag "$name"
- publishDir "$baseDir/output/$name/qc_fastq", mode: 'copy'
-
+ publishDir "$baseDir/output/$name/$task.process", mode: 'copy'
input:
set val(name), file(reads) from read_pairs
@@ -30,4 +29,4 @@ process qc_fastq {
module load fastqc/0.11.5
$baseDir/scripts/qc_fastq.py -f $reads
"""
- }
+}
diff --git a/workflow/scripts/qc_fastq.py b/workflow/scripts/qc_fastq.py
old mode 100644
new mode 100755
--
GitLab