From 60ff5559ca456ef3cfc43ea930330f355ecc80ef Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Wed, 18 Oct 2017 11:27:50 -0500
Subject: [PATCH] Fix missing variable.
---
workflow/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/main.nf b/workflow/main.nf
index e485386..664ed7c 100644
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -166,7 +166,7 @@ process filterReads {
// Define channel collecting new design file
dedupDesign = dedupReads
.map{ sampleId, bam, bai, biosample, factor, treatment, replicate, controlId ->
- "$sample_id\t$bam\t$bai\t$biosample\t$factor\t$treatment\t$replicate\t$controlId\n"}
+ "$sampleId\t$bam\t$bai\t$biosample\t$factor\t$treatment\t$replicate\t$controlId\n"}
.collectFile(name:'design_dedup.tsv', seed:"sample_id\tbam_reads\tbam_index\tbiosample\tfactor\ttreatment\treplicate\tcontrolId\n", storeDir:"$baseDir/output/design")
// Quality Metrics using deeptools
--
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