From 596e145d69cbfefeea01e60e1a1f62b1e233e8f8 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Thu, 25 Jul 2019 16:21:52 -0500
Subject: [PATCH] make df from dict
---
workflow/scripts/pool_and_psuedoreplicate.py | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index 887d0d3..8f31301 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -237,8 +237,9 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
# Update design to include new self pseudo replicates
+ self_pseudoreplicates_df = pd.DataFrame.from_dict(self_pseudoreplicates_dict)
pool_pseudoreplicates_dict = {}
- for rep, pseudorep_file in self_pseudoreplicates_dict.items():
+ for rep, pseudorep_file in self_pseudoreplicates_df.iterrows():
path_to_file = cwd + '/' + pseudorep_file
replicate = rep + 1
design_new_df.loc[replicate, 'tag_align'] = path_to_file
--
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