diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 83ef6e5f6e80f646f93eff71bf9016c85e1f96fe..67829760655698ee58de138d71f224c637425807 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -34,8 +34,6 @@ single_end_mouse: script: - nextflow run workflow/main.nf --astrocyte true -resume - pytest -m singleend - artifacts: - expire_in: 2 days paired_end_human: stage: single @@ -46,8 +44,6 @@ paired_end_human: script: - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false -resume - pytest -m pairedend - artifacts: - expire_in: 2 days single_end_diff: stage: multiple @@ -59,8 +55,6 @@ single_end_diff: - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte false -resume - pytest -m singleend - pytest -m singlediff - artifacts: - expire_in: 2 days paired_end_diff: only: @@ -70,8 +64,6 @@ paired_end_diff: - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false -resume - pytest -m pairedend - pytest -m paireddiff - artifacts: - expire_in: 2 days single_end_skip: stage: skip @@ -80,5 +72,3 @@ single_end_skip: script: - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --skipPlotProfile true --astrocyte false -resume - pytest -m singleskip_true - artifacts: - expire_in: 2 days