From 526cd489c69b5701bbd1c3b43c4101f1ee3942fa Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 28 Jan 2020 16:18:09 -0600
Subject: [PATCH] Fix adding path. Not needed if file is the same.
---
workflow/scripts/pool_and_psuedoreplicate.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index 6c37eed..25cc444 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -267,7 +267,7 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
path_to_control
else:
- path_to_pool_control = cwd + '/' + pool_control
+ path_to_pool_control = pool_control
design_new_df['control_tag_align'] = path_to_pool_control
# Add in pseudo replicates
@@ -306,7 +306,7 @@ def main():
design_df = pd.read_csv(design, sep='\t')
# Get current directory to build paths
- cwd = os.getcwd()
+ cwd = os.getcwd()
# Check Number of replicates and replicates
no_reps = check_replicates(design_df)
--
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