diff --git a/workflow/scripts/runDeepTools.py b/workflow/scripts/experiment_qc.py similarity index 100% rename from workflow/scripts/runDeepTools.py rename to workflow/scripts/experiment_qc.py diff --git a/workflow/scripts/map_qc.py b/workflow/scripts/map_qc.py index f44b6e4cd39895fa09984a13ce066cbf8d5299b8..db9973c9683fca648ace7c5b0a77fe2a6e1a72a2 100644 --- a/workflow/scripts/map_qc.py +++ b/workflow/scripts/map_qc.py @@ -154,7 +154,7 @@ def dedup_mapped(bam, bam_basename, paired): # Markduplicates dup_file_qc_filename = bam_basename + ".dup.qc" tmp_dup_mark_filename = bam_basename + ".dupmark.bam" - sambamba_parms = "--hash-table-size=17592186044416" + \ + sambamba_params = "--hash-table-size=17592186044416" + \ " --overflow-list-size=20000000 --io-buffer-size=256" with open(dup_file_qc_filename, 'w') as fh: sambamba_markdup_command = (