diff --git a/workflow/tests/test_annotate_peaks.py b/workflow/tests/test_annotate_peaks.py
index 22e1d78ef149890c1b518225f6e01b2e259aabdb..73656357dc176169246c8196f20c60555e87dfac 100644
--- a/workflow/tests/test_annotate_peaks.py
+++ b/workflow/tests/test_annotate_peaks.py
@@ -41,4 +41,4 @@ def test_upsetplot_pairedend():
 def test_annotation_pairedend():
     annotation_file = test_output_path + 'ENCSR729LGA.chipseeker_annotation.tsv'
     assert os.path.exists(annotation_file)
-    assert utils.count_lines(annotation_file) >= 25466
+    assert utils.count_lines(annotation_file) >= 25367
diff --git a/workflow/tests/test_overlap_peaks.py b/workflow/tests/test_overlap_peaks.py
index 67435d9968bcf4c681c43685cb85a35475cb8b1e..c450551ab5ac582977163c5d59220f5e807615c6 100644
--- a/workflow/tests/test_overlap_peaks.py
+++ b/workflow/tests/test_overlap_peaks.py
@@ -44,4 +44,4 @@ def test_overlap_peaks_singleend():
 def test_overlap_peaks_pairedend():
     assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA.rejected.narrowPeak'))
     peak_file = test_output_path + 'ENCSR729LGA.replicated.narrowPeak'
-    assert utils.count_lines(peak_file) >= 25758
+    assert utils.count_lines(peak_file) >= 25657