From 397be30be8417052dbe71748bdc447cf7b385ab2 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 10 Feb 2020 17:00:02 -0600
Subject: [PATCH] Remove resume.
---
.gitlab-ci.yml | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 34c2a65..9d6b954 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -32,7 +32,7 @@ single_end_mouse:
only:
- master
script:
- - nextflow run workflow/main.nf --astrocyte true -resume
+ - nextflow run workflow/main.nf --astrocyte true
- pytest -m singleend
paired_end_human:
@@ -42,7 +42,7 @@ paired_end_human:
except:
- master
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false -resume
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false
- pytest -m pairedend
single_end_single_control:
@@ -52,7 +52,7 @@ single_end_single_control:
except:
- master
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false -resume
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false
single_end_diff:
stage: multiple
@@ -61,7 +61,7 @@ single_end_diff:
except:
- master
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte false -resume
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte false
- pytest -m singleend
- pytest -m singlediff
@@ -70,7 +70,7 @@ paired_end_diff:
- master
stage: multiple
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false -resume
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true --astrocyte false
- pytest -m pairedend
- pytest -m paireddiff
@@ -79,5 +79,5 @@ single_end_skip:
only:
- master
script:
- - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --skipPlotProfile true --astrocyte false -resume
+ - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true --skipPlotProfile true --astrocyte false
- pytest -m singleskip_true
--
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