From 39092668b2add32c82fe2cb6d17abdb34a7c4ea9 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Fri, 19 Jul 2019 14:47:23 -0500
Subject: [PATCH] revert to last version
---
workflow/scripts/pool_and_psuedoreplicate.py | 30 ++++++++++----------
1 file changed, 15 insertions(+), 15 deletions(-)
diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index adc9c4b..eb1b04f 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -312,25 +312,25 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
path_to_pool_control = cwd + '/' + pool_control
design_new_df['control_tag_align'] = path_to_pool_control
- # Add in pseudo replicates
- tmp_metadata = design_new_df.loc[0].copy()
- tmp_metadata['control_tag_align'] = path_to_pool_control
- for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
- tmp_metadata['sample_id'] = experiment_id + '_pr' + str(rep)
- tmp_metadata['replicate'] = str(rep) + '_pr'
+ # Add in pseudo replicates
+ tmp_metadata = design_new_df.loc[0].copy()
+ tmp_metadata['control_tag_align'] = path_to_pool_control
+ for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
+ tmp_metadata['sample_id'] = experiment_id + '_pr' + str(rep)
+ tmp_metadata['replicate'] = str(rep) + '_pr'
+ tmp_metadata['xcor'] = 'Calculate'
+ path_to_file = cwd + '/' + pseudorep_file
+ tmp_metadata['tag_align'] = path_to_file
+ design_new_df = design_new_df.append(tmp_metadata)
+
+ # Add in pool experiment
+ tmp_metadata['sample_id'] = experiment_id + '_pooled'
+ tmp_metadata['replicate'] = 'pooled'
tmp_metadata['xcor'] = 'Calculate'
- path_to_file = cwd + '/' + pseudorep_file
+ path_to_file = cwd + '/' + pool_experiment_se
tmp_metadata['tag_align'] = path_to_file
design_new_df = design_new_df.append(tmp_metadata)
- # Add in pool experiment
- tmp_metadata['sample_id'] = experiment_id + '_pooled'
- tmp_metadata['replicate'] = 'pooled'
- tmp_metadata['xcor'] = 'Calculate'
- path_to_file = cwd + '/' + pool_experiment_se
- tmp_metadata['tag_align'] = path_to_file
- design_new_df = design_new_df.append(tmp_metadata)
-
return design_new_df
--
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