From 37906e07393a754c359935465ef14f74ecef666c Mon Sep 17 00:00:00 2001
From: Beibei Chen <beibei.chen@utsouthwestern.edu>
Date: Wed, 26 Apr 2017 10:17:51 -0500
Subject: [PATCH] update yaml
---
astrocyte_pkg.yml | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/astrocyte_pkg.yml b/astrocyte_pkg.yml
index 398bd04..754c091 100644
--- a/astrocyte_pkg.yml
+++ b/astrocyte_pkg.yml
@@ -87,7 +87,7 @@ workflow_parameters:
type: files
required: true
description: |
- Peak files of all samples. Peaks should be sorted. Bed format
+ Peak files of all samples. Peaks should be sorted by user using either p_value or intensity of the signals.Bed format.
regex: ".*(narrowPeak|broadPeak|bed|BED)"
@@ -113,8 +113,8 @@ workflow_parameters:
type: integer
required: true
description: |
- The number of top peaks to use for motif discovery.
- default: 200
+ The number of top peaks to use for motif discovery. This program won't sort peak BED files for you, so please make sure your peak files are already sorted. Default : -1, use all the peaks
+ default: -1
# -----------------------------------------------------------------------------
# SHINY APP CONFIGURATION
--
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