From 34a5183e186b00c238e43ffbda6d947b0191c73b Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Thu, 14 Mar 2019 11:50:38 -0500
Subject: [PATCH] Fix yml.
---
.gitlab-ci.yml | 12 +-----------
1 file changed, 1 insertion(+), 11 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index fa19e08..0eee980 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -6,9 +6,9 @@ before_script:
stages:
- unit
- - skip
- single
- multiple
+ - skip
user_configuration:
stage: unit
@@ -20,8 +20,6 @@ single_end_mouse:
stage: single
only:
- master
- except:
- - branches
script:
- nextflow run workflow/main.nf -resume
- pytest -m singleend
@@ -32,8 +30,6 @@ paired_end_human:
stage: single
only:
- branches
- except:
- - master
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
- pytest -m pairedend
@@ -44,8 +40,6 @@ single_end_diff:
stage: multiple
only:
- branches
- except:
- - master
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' -resume
- pytest -m singlediff
@@ -55,8 +49,6 @@ single_end_diff:
paired_end_diff:
only:
- master
- except:
- - branches
stage: multiple
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
@@ -67,8 +59,6 @@ paired_end_diff:
single_end_skip:
stage: skip
only:
- - branches
- except:
- master
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --skipDiff true --skipMotif true -resume
--
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