From 254ac382da006d15d60e1ece9ddad5d91fc4e2b3 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Thu, 25 Jul 2019 16:15:12 -0500
Subject: [PATCH] fix spacing
---
workflow/scripts/pool_and_psuedoreplicate.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index cdf4d5b..da1763d 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -231,14 +231,14 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
# Make 2 self psuedoreplicates
self_pseudoreplicates_dict = {}
- for rep, tag_file in zip(design_df['replicate'], design_df['tag_align']):
+ for rep, tag_file in zip(design_df['replicate'], design_df['tag_align']):
replicate_prefix = experiment_id + '_' + str(rep)
self_pseudoreplicates_dict = self_psuedoreplication(tag_file, replicate_prefix, paired)
# Update design to include new self pseudo replicates
pool_pseudoreplicates_dict = {}
- for rep, pseudorep_file in self_pseudoreplicates_dict.items():
+ for rep, pseudorep_file in self_pseudoreplicates_dict.items():
path_to_file = cwd + '/' + pseudorep_file
replicate = rep + 1
design_new_df.loc[replicate, 'tag_align'] = path_to_file
--
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