diff --git a/workflow/main.nf b/workflow/main.nf index d54a92ec34df8c50bf9057b17b965454063cf3c1..89d717152fae125db527faa39d49835758f8571d 100644 --- a/workflow/main.nf +++ b/workflow/main.nf @@ -365,11 +365,12 @@ process consensusPeaks { output: - file '*.narrowPeak' into consensusPeaks + file '*.replicated.*' into consensusPeaks + file '*.rejected.*' into rejectedPeaks file("design_diffPeaks.tsv") into designFilePaths script: - + """ python3 $baseDir/scripts/overlap_peaks.py -d $peaksDesign -f preDiffDesign """