From 0f2a8f86097cc73a68cbae52fba56a6196cbeeef Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Tue, 25 Dec 2018 12:53:23 -0600
Subject: [PATCH] Fix our file name
---
workflow/scripts/motif_search.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/scripts/motif_search.py b/workflow/scripts/motif_search.py
index 5cf2785..6de1b63 100644
--- a/workflow/scripts/motif_search.py
+++ b/workflow/scripts/motif_search.py
@@ -57,8 +57,8 @@ def motif_search(filename, genome, experiment):
# Sort Bed file by
out, err = run_pipe([
- 'sort -k %dgr,%dgr %s' % (5, 5, filename),
- sorted_fn)
+ 'sort -k %dgr,%dgr %s' % (5, 5, filename)],
+ outfile=sorted_fn)
# Get fasta file
out, err = utils.run_pipe([
--
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