diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 670c4c1d6cb7507049ab5314e669ceb20117f547..d7efe66bb2dc24f29d735a51bff84b38f46fdf4d 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1,13 +1,7 @@ -variables: - GIT_DEPTH: 5 - GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_NAME/$CI_PIPELINE_ID/$CI_CONCURRENT_ID/$CI_JOB_ID/ - - before_script: - module add python/3.6.1-2-anaconda - pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1 - module load nextflow/0.31.0 - - ulimit -c unlimited - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/ stages: