diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index fe08d272b4716c76cd5b21459d9e9c059d3a1431..5542ff958efe0d5f486ebe41f6e8f835e3f8ad6b 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1,13 +1,7 @@ -variables: - GIT_DEPTH: 5 - GIT_CLONE_PATH: $CI_BUILDS_DIR/$CI_RUNNER_SHORT_TOKEN/$CI_PROJECT_NAME/$CI_PIPELINE_ID/$CI_CONCURRENT_ID/$CI_JOB_ID/ - - before_script: - module add python/3.6.1-2-anaconda - pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1 - module load nextflow/0.31.0 - - ulimit -c unlimited - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/ stages: