From 034d2f58fb0bd10660dd9dfc943b1275e499e324 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Mon, 9 Oct 2017 09:04:59 -0500
Subject: [PATCH] Update testing params.
---
workflow/tests/test_map_reads.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/workflow/tests/test_map_reads.py b/workflow/tests/test_map_reads.py
index ba9587e..d5a8366 100644
--- a/workflow/tests/test_map_reads.py
+++ b/workflow/tests/test_map_reads.py
@@ -8,8 +8,8 @@ def test_map_reads_singleend():
aligned_reads_report = os.path.dirname(os.path.abspath(__file__)) + \
'/../output/alignReads/ENCFF646LXU.srt.bam.flagstat.qc'
samtools_report = open(aligned_reads_report).readlines()
- assert '80795025' in samtools_report[1]
- assert '80050072' in samtools_report[5]
+ assert '80795025 + 0 in total' in samtools_report[0]
+ assert '80050072 + 0 mapped (99.08% : N/A)' in samtools_report[4]
def test_map_reads_pairedend():
--
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