From cca00d947fa43a82db81d2e3686cdb2e2aa6145a Mon Sep 17 00:00:00 2001
From: John Lafin <john.lafin@utsouthwestern.edu>
Date: Tue, 17 Sep 2024 13:14:41 -0500
Subject: [PATCH] Fix script ordering
---
scripts/{02_initial_analysis.R => 01_initial_analysis.R} | 4 ++--
scripts/{01_preprocess.R => 02_preprocess.R} | 6 +++---
2 files changed, 5 insertions(+), 5 deletions(-)
rename scripts/{02_initial_analysis.R => 01_initial_analysis.R} (99%)
rename scripts/{01_preprocess.R => 02_preprocess.R} (96%)
diff --git a/scripts/02_initial_analysis.R b/scripts/01_initial_analysis.R
similarity index 99%
rename from scripts/02_initial_analysis.R
rename to scripts/01_initial_analysis.R
index abd8d05..dae689d 100644
--- a/scripts/02_initial_analysis.R
+++ b/scripts/01_initial_analysis.R
@@ -1,6 +1,6 @@
# Initializing single cell data
# Author: John T Lafin
-# Updated: 2024-08-13
+# Updated: 2024-09-17
print("Script begin at: ")
Sys.time()
@@ -24,7 +24,7 @@ options(future.globals.maxSize = 8000 * 1024^2)
set.seed(42)
# Create output dir
-outdir <- "data_modified/2024-08-13_initial_analysis/"
+outdir <- "data_modified/01_initial_analysis/"
dir.create(outdir, showWarnings = FALSE)
# Load data ---------------------------------------------------------------
diff --git a/scripts/01_preprocess.R b/scripts/02_preprocess.R
similarity index 96%
rename from scripts/01_preprocess.R
rename to scripts/02_preprocess.R
index 12a3d1d..60e3bec 100644
--- a/scripts/01_preprocess.R
+++ b/scripts/02_preprocess.R
@@ -1,6 +1,6 @@
# Pre-processing single cell data
# Author: John T Lafin
-# Updated: 2024-08-13
+# Updated: 2024-09-17
print("Script begin at: ")
Sys.time()
@@ -24,11 +24,11 @@ options(future.globals.maxSize = 8000 * 1024^2)
set.seed(42)
# Create output dir
-outdir <- "data_modified/2024-08-13_preprocess/"
+outdir <- "data_modified/02_preprocess/"
dir.create(outdir, showWarnings = FALSE)
# Load data
-seu <- readRDS("data_modified/2024-08-13_initial_analysis/merged_object.rds")
+seu <- readRDS("data_modified/01_initial_analysis/merged_object.rds")
# Clustering --------------------------------------------------------------
--
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