diff --git a/scripts/02_initial_analysis.R b/scripts/01_initial_analysis.R
similarity index 99%
rename from scripts/02_initial_analysis.R
rename to scripts/01_initial_analysis.R
index abd8d05ab985b427dcc1f06231232e20fbe477e1..dae689d44be9a7c144f9da982aa26037f1b90859 100644
--- a/scripts/02_initial_analysis.R
+++ b/scripts/01_initial_analysis.R
@@ -1,6 +1,6 @@
 # Initializing single cell data
 # Author: John T Lafin
-# Updated: 2024-08-13
+# Updated: 2024-09-17
 
 print("Script begin at: ")
 Sys.time()
@@ -24,7 +24,7 @@ options(future.globals.maxSize = 8000 * 1024^2)
 set.seed(42)
 
 # Create output dir
-outdir <- "data_modified/2024-08-13_initial_analysis/"
+outdir <- "data_modified/01_initial_analysis/"
 dir.create(outdir, showWarnings = FALSE)
 
 # Load data ---------------------------------------------------------------
diff --git a/scripts/01_preprocess.R b/scripts/02_preprocess.R
similarity index 96%
rename from scripts/01_preprocess.R
rename to scripts/02_preprocess.R
index 12a3d1d04c288d76734957adfd6168cdb0784367..60e3bece18b3f3460151be65df37629db20e8cbc 100644
--- a/scripts/01_preprocess.R
+++ b/scripts/02_preprocess.R
@@ -1,6 +1,6 @@
 # Pre-processing single cell data
 # Author: John T Lafin
-# Updated: 2024-08-13
+# Updated: 2024-09-17
 
 print("Script begin at: ")
 Sys.time()
@@ -24,11 +24,11 @@ options(future.globals.maxSize = 8000 * 1024^2)
 set.seed(42)
 
 # Create output dir
-outdir <- "data_modified/2024-08-13_preprocess/"
+outdir <- "data_modified/02_preprocess/"
 dir.create(outdir, showWarnings = FALSE)
 
 # Load data
-seu <- readRDS("data_modified/2024-08-13_initial_analysis/merged_object.rds")
+seu <- readRDS("data_modified/01_initial_analysis/merged_object.rds")
 
 # Clustering --------------------------------------------------------------