Issues · Strand Lab / sc-TissueMapper_Pr

New issue

Make bash.scripts take project from command line and pass to Rscript opt

#8 · created Mar 29, 2018 by Gervaise Henry Enhancement
- CLOSED
- 0
updated Aug 13, 2019
Make unique names for QC plots

#20 · created Jun 17, 2018 by Gervaise Henry BUG
- CLOSED
- 0
updated Aug 13, 2019
Add Surface/Nucleus predictor

#21 · created Jun 20, 2018 by Gervaise Henry Enhancement
- CLOSED
- 0
updated Aug 13, 2019
Test clusterProfiler in lieu of QuSAGE

#15 · created Apr 10, 2018 by Gervaise Henry Test
- CLOSED
- 0
updated Aug 13, 2019
Pd DEG not have all OE pops in comparisons!

#23 · created Nov 02, 2018 by Gervaise Henry Nov 5, 2018 BUG
- CLOSED
- 0
updated Nov 03, 2018
Remove depreciated scripts

#22 · created Jun 20, 2018 by Gervaise Henry Enhancement
- CLOSED
- 0
updated Oct 01, 2018
Fix CCA VlnPlot

#19 · created Jun 17, 2018 by Gervaise Henry BUG
- CLOSED
- 0
updated Jun 18, 2018
Prevent error if NE fail because no NE

#3 · created Mar 27, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 17, 2018
Fix OE1/2 order in dot plot on sc_DEG.R

#6 · created Mar 28, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 17, 2018
Change r.scripts to functions

#9 · created Mar 29, 2018 by Gervaise Henry
- CLOSED
- 0
updated Jun 11, 2018
Integrate Jackstraw with multi-core parallel processing

#17 · created Apr 12, 2018 by Gervaise Henry
- CLOSED
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updated Jun 11, 2018
Alter PCA cutoff

#18 · created May 14, 2018 by Gervaise Henry
- CLOSED
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updated Jun 11, 2018
Fix NE display

#5 · created Mar 28, 2018 by Gervaise Henry
- CLOSED
- 0
updated May 14, 2018
Integrate new suggested technique for large data handling from seurat

#11 · created Apr 06, 2018 by Gervaise Henry
- CLOSED
- 2
updated Apr 16, 2018
Fix QuSAGE tSNE ouput filenames

#16 · created Apr 10, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 12, 2018
Reintegrate nuclear/surface marker prediction into DEG generation

#14 · created Apr 09, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Prevent error if anchor gene doesn't exist in data

#2 · created Mar 27, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Allow DEG and Table scripts to run without NE ID

#4 · created Mar 27, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
LineageSubClust (Epi+St) res tSNE's put in global directory when NoStress analysis selected

#12 · created Apr 08, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018
Allow Epi/St SubClust Merge to have different resolutions

#13 · created Apr 08, 2018 by Gervaise Henry
- CLOSED
- 0
updated Apr 09, 2018