diff --git a/bash.scripts/sc_TissueMapper-DPrF.sh b/bash.scripts/sc_TissueMapper-DPrF.sh index c38f8a99a337eaec700828c452fcf444ca0e0ea0..ae34cb34d687d4355a68f014a245ae74757c1ba9 100644 --- a/bash.scripts/sc_TissueMapper-DPrF.sh +++ b/bash.scripts/sc_TissueMapper-DPrF.sh @@ -10,4 +10,6 @@ module load R/3.4.1-gccmkl -Rscript ../r.scripts/sc-TissueMapper_RUN.D.R \ No newline at end of file +Rscript ../r.scripts/sc-TissueMapper_RUN.D.R +Rscript ../r.scripts/sc-TissueMapper_RUN.D.diy.R +Rscript ../r.scripts/sc-TissueMapper_RUN.D.pseudotime.R \ No newline at end of file diff --git a/r.scripts/sc-TissueMapper.R b/r.scripts/sc-TissueMapper.R index 1ee7a08ac449bc552afb8dff74843d6d2345f7a8..cf280c0b663c50b1fbbed2c67f86f4480b7fa95a 100644 --- a/r.scripts/sc-TissueMapper.R +++ b/r.scripts/sc-TissueMapper.R @@ -1133,6 +1133,5 @@ scPseudotime <- function(sc10x,i,ds){ BEAM_res <- BEAM(scMonocle,branch_point=1,cores=50) BEAM_res <- BEAM_res[order(BEAM_res$qval),] BEAM_res <- BEAM_res[,c("gene_short_name","pval","qval")] - plot_genes_branched_heatmap(scMonocle[rownames(subset(BEAM_res,qval<1e-4)),],branch_point=1,num_clusters=5,cores=50,use_gene_short_name=TRUE,show_rownames=TRUE) - -} \ No newline at end of file + #plot_genes_branched_heatmap(scMonocle[rownames(subset(BEAM_res,qval<1e-4)),],branch_point=1,num_clusters=5,cores=50,use_gene_short_name=TRUE,show_rownames=TRUE) +}