From f325d9c03c8daa7c5be28148f50d422b15c55281 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 17 Oct 2018 23:42:34 -0500
Subject: [PATCH] Change post stress res to 1
---
r.scripts/sc-TissueMapper_RUN.PdPbPc.Pc.R | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/r.scripts/sc-TissueMapper_RUN.PdPbPc.Pc.R b/r.scripts/sc-TissueMapper_RUN.PdPbPc.Pc.R
index c6ebb5d..f277894 100644
--- a/r.scripts/sc-TissueMapper_RUN.PdPbPc.Pc.R
+++ b/r.scripts/sc-TissueMapper_RUN.PdPbPc.Pc.R
@@ -107,7 +107,7 @@ option_list=list(
make_option("--st",action="store",default=TRUE,type='logical',help="Remove stressed cells?"),
make_option("--stg",action="store",default="dws",type='character',help="Geneset to use for stress ID"),
make_option("--cut.stress",action="store",default=0.9,type='numeric',help="Cutoff for stress score"),
- make_option("--res.poststress",action="store",default=0.5,type='numeric',help="Resolution to cluster, post-stress"),
+ make_option("--res.poststress",action="store",default=1,type='numeric',help="Resolution to cluster, post-stress"),
make_option("--cut.ne",action="store",default=0.999,type='numeric',help="Cutoff for NE score")
)
opt=parse_args(OptionParser(option_list=option_list))
--
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