diff --git a/r.scripts/sc-TissueMapper_RUN.PdPbPc.Pc.R b/r.scripts/sc-TissueMapper_RUN.PdPbPc.Pc.R index c6ebb5d54e768e844c3084de7408a0f24171c0f5..f2778948c8ef3d0b5b1c5073da7a331929357320 100644 --- a/r.scripts/sc-TissueMapper_RUN.PdPbPc.Pc.R +++ b/r.scripts/sc-TissueMapper_RUN.PdPbPc.Pc.R @@ -107,7 +107,7 @@ option_list=list( make_option("--st",action="store",default=TRUE,type='logical',help="Remove stressed cells?"), make_option("--stg",action="store",default="dws",type='character',help="Geneset to use for stress ID"), make_option("--cut.stress",action="store",default=0.9,type='numeric',help="Cutoff for stress score"), - make_option("--res.poststress",action="store",default=0.5,type='numeric',help="Resolution to cluster, post-stress"), + make_option("--res.poststress",action="store",default=1,type='numeric',help="Resolution to cluster, post-stress"), make_option("--cut.ne",action="store",default=0.999,type='numeric',help="Cutoff for NE score") ) opt=parse_args(OptionParser(option_list=option_list))