From f0fd7e61344c07a1c162b8925415ada4a3c2f22e Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 29 Apr 2018 16:00:34 -0500
Subject: [PATCH] Make default demultiplex file group number = 1
---
r.scripts/sc_Demultiplex.R | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/r.scripts/sc_Demultiplex.R b/r.scripts/sc_Demultiplex.R
index c2a74b2..8db3ce4 100755
--- a/r.scripts/sc_Demultiplex.R
+++ b/r.scripts/sc_Demultiplex.R
@@ -8,7 +8,7 @@ library(readr)
#retrive command line options
option_list=list(
make_option("--p",action="store",default="Pr",type='character',help="Project Name"),
- make_option("--d",action="store",default=4,type='integer',help="Demultiplex Group Number"),
+ make_option("--d",action="store",default=1,type='integer',help="Demultiplex Group Number"),
make_option("--mc",action="store",default=3,type='integer',help="Minimum Cells"),
make_option("--mg",action="store",default=200,type='integer',help="Minimum Genes")
)
--
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