From ef38fbfde91ebf4f8a58107767e58f56034ca334 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 2 Nov 2018 17:41:39 -0500
Subject: [PATCH] Don't do cell cycle analysis for DS.D17
---
r.scripts/sc-TissueMapper_RUN.DS_D17.R | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/r.scripts/sc-TissueMapper_RUN.DS_D17.R b/r.scripts/sc-TissueMapper_RUN.DS_D17.R
index 4364d8a..b0bc89f 100644
--- a/r.scripts/sc-TissueMapper_RUN.DS_D17.R
+++ b/r.scripts/sc-TissueMapper_RUN.DS_D17.R
@@ -103,7 +103,7 @@ option_list=list(
make_option("--lx",action="store",default=0.2,type='numeric',help="x low threshold for hvg selection"),
make_option("--hx",action="store",default=5,type='numeric',help="x high threshold for hvg selection"),
make_option("--ly",action="store",default=1,type='numeric',help="y low threshold for hvg selection"),
- make_option("--cc",action="store",default=TRUE,type='logical',help="Scale cell cycle?"),
+ make_option("--cc",action="store",default=FALSE,type='logical',help="Scale cell cycle?"),
make_option("--cca",action="store",default=50,type='integer',help="Number of CCAs to cacluate"),
make_option("--acca",action="store",default=30,type='integer',help="Number of CCAs to align"),
make_option("--pc",action="store",default=50,type='integer',help="Number of PCs to cacluate"),
--
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