From ed753d6e24f2184e782198fb36175f8614d2e37f Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 2 Nov 2018 15:59:53 -0500
Subject: [PATCH] Use rebuilt R/3.4.1
---
bash.scripts/sc_TissueMapper-DS_D17.sh | 2 +-
r.scripts/sc-TissueMapper_RUN.DS_D17.R | 2 ++
r.scripts/sc-TissueMapper_RUN.DS_D17.aggr.R | 2 ++
3 files changed, 5 insertions(+), 1 deletion(-)
diff --git a/bash.scripts/sc_TissueMapper-DS_D17.sh b/bash.scripts/sc_TissueMapper-DS_D17.sh
index 198685b..3690d4f 100644
--- a/bash.scripts/sc_TissueMapper-DS_D17.sh
+++ b/bash.scripts/sc_TissueMapper-DS_D17.sh
@@ -8,6 +8,6 @@
#SBATCH --mail-type ALL
#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
-module load R/3.4.1-gccmkl
+module load R/3.4.1-gccmkl_20181025
Rscript ../r.scripts/sc-TissueMapper_RUN.DS_D17.R
diff --git a/r.scripts/sc-TissueMapper_RUN.DS_D17.R b/r.scripts/sc-TissueMapper_RUN.DS_D17.R
index 653a8fd..4364d8a 100644
--- a/r.scripts/sc-TissueMapper_RUN.DS_D17.R
+++ b/r.scripts/sc-TissueMapper_RUN.DS_D17.R
@@ -13,6 +13,8 @@ library(viridis)
library(reshape2)
library(NMI)
+options(bitmapType="cairo")
+
source("../r.scripts/sc-TissueMapper.R")
#Create folder structure
diff --git a/r.scripts/sc-TissueMapper_RUN.DS_D17.aggr.R b/r.scripts/sc-TissueMapper_RUN.DS_D17.aggr.R
index cac02a2..91ae977 100755
--- a/r.scripts/sc-TissueMapper_RUN.DS_D17.aggr.R
+++ b/r.scripts/sc-TissueMapper_RUN.DS_D17.aggr.R
@@ -13,6 +13,8 @@ library(viridis)
library(reshape2)
library(NMI)
+options(bitmapType="cairo")
+
source("../r.scripts/sc-TissueMapper.R")
setwd("../")
--
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