diff --git a/bash.scripts/sc_TissueMapper-DS_D17.sh b/bash.scripts/sc_TissueMapper-DS_D17.sh index 198685b1bb589757f0f23c097dea4d6f9d7f4a8b..3690d4fb6f0fa4006e8d1d026161228dc4264671 100644 --- a/bash.scripts/sc_TissueMapper-DS_D17.sh +++ b/bash.scripts/sc_TissueMapper-DS_D17.sh @@ -8,6 +8,6 @@ #SBATCH --mail-type ALL #SBATCH --mail-user gervaise.henry@utsouthwestern.edu -module load R/3.4.1-gccmkl +module load R/3.4.1-gccmkl_20181025 Rscript ../r.scripts/sc-TissueMapper_RUN.DS_D17.R diff --git a/r.scripts/sc-TissueMapper_RUN.DS_D17.R b/r.scripts/sc-TissueMapper_RUN.DS_D17.R index 653a8fd81c05afc6115c0608496f9aef7578a749..4364d8ae436a3873f3fbfd037af47e9e8264f93a 100644 --- a/r.scripts/sc-TissueMapper_RUN.DS_D17.R +++ b/r.scripts/sc-TissueMapper_RUN.DS_D17.R @@ -13,6 +13,8 @@ library(viridis) library(reshape2) library(NMI) +options(bitmapType="cairo") + source("../r.scripts/sc-TissueMapper.R") #Create folder structure diff --git a/r.scripts/sc-TissueMapper_RUN.DS_D17.aggr.R b/r.scripts/sc-TissueMapper_RUN.DS_D17.aggr.R index cac02a21cb42514e98900e8a21a90ffc2f57dadb..91ae977c98f84b5dfcb9943b4293cccbb35f5625 100755 --- a/r.scripts/sc-TissueMapper_RUN.DS_D17.aggr.R +++ b/r.scripts/sc-TissueMapper_RUN.DS_D17.aggr.R @@ -13,6 +13,8 @@ library(viridis) library(reshape2) library(NMI) +options(bitmapType="cairo") + source("../r.scripts/sc-TissueMapper.R") setwd("../")