diff --git a/r.scripts/sc-TissueMapper_RUN.D17_FACS.R b/r.scripts/sc-TissueMapper_RUN.D17_FACS.R index 7812cd1180f5bd6ac6604f8cd4d15fd8bdae8992..d884b5f6c9e5bae29c55f85dbe9cecbdecc9abfb 100644 --- a/r.scripts/sc-TissueMapper_RUN.D17_FACS.R +++ b/r.scripts/sc-TissueMapper_RUN.D17_FACS.R @@ -180,7 +180,7 @@ gene.set <- c(gene.set,gene.set1) rm(gene.set1) gc() min.all <- min(table(sc10x@meta.data[,paste0("res",opt$res.poststress)])) -results <- scQuSAGE(sc10x,gs=gene.set,res.use=opt$res.poststress,ds=min.all,nm="Lin",folder="lin") +results <- scQuSAGE(sc10x,gs=gene.set,res.use=opt$res.poststress,ds=0,nm="Lin",folder="lin") sc10x <- results[[1]] results.cor.Lin <- results[[2]] results.clust.Lin.id <- results[[3]] @@ -254,7 +254,7 @@ gene.set <- c(gene.set,gene.set1) rm(gene.set1) gc() min.epi <- min(table(sc10x.Epi@meta.data[,paste0("res",opt$res.poststress)])) -results <- scQuSAGE(sc10x.Epi,gs=gene.set,res.use=opt$res.poststress,ds=min.epi,nm="Epi.dws.sc",folder="epi") +results <- scQuSAGE(sc10x.Epi,gs=gene.set,res.use=opt$res.poststress,ds=0,nm="Epi.dws.sc",folder="epi") sc10x.Epi <- results[[1]] results.cor.Epi.dws <- results[[2]] results.clust.Epi.dws.id <- results[[3]] @@ -284,7 +284,7 @@ gene.set <- c(gene.set,gene.set1) rm(gene.set1) gc() min.st <- min(table(sc10x.St@meta.data[,paste0("res",opt$res.poststress)])) -results <- scQuSAGE(sc10x.St,gs=gene.set,res.use=opt$res.poststress,ds=min.st,nm="St.dws.sc",folder="st") +results <- scQuSAGE(sc10x.St,gs=gene.set,res.use=opt$res.poststress,ds=0,nm="St.dws.sc",folder="st") sc10x.St <- results[[1]] results.cor.St.go <- results[[2]] results.clust.St.go.id <- results[[3]] diff --git a/r.scripts/sc-TissueMapper_RUN.D27_FACS.R b/r.scripts/sc-TissueMapper_RUN.D27_FACS.R index 61cadc9c0da54b927d49f81fb35f9f76986d82e8..a7328b815b334abea3a6fa837c0460adfd9d0476 100644 --- a/r.scripts/sc-TissueMapper_RUN.D27_FACS.R +++ b/r.scripts/sc-TissueMapper_RUN.D27_FACS.R @@ -180,7 +180,7 @@ gene.set <- c(gene.set,gene.set1) rm(gene.set1) gc() min.all <- min(table(sc10x@meta.data[,paste0("res",opt$res.poststress)])) -results <- scQuSAGE(sc10x,gs=gene.set,res.use=opt$res.poststress,ds=min.all,nm="Lin",folder="lin") +results <- scQuSAGE(sc10x,gs=gene.set,res.use=opt$res.poststress,ds=0,nm="Lin",folder="lin") sc10x <- results[[1]] results.cor.Lin <- results[[2]] results.clust.Lin.id <- results[[3]] @@ -254,7 +254,7 @@ gene.set <- c(gene.set,gene.set1) rm(gene.set1) gc() min.epi <- min(table(sc10x.Epi@meta.data[,paste0("res",opt$res.poststress)])) -results <- scQuSAGE(sc10x.Epi,gs=gene.set,res.use=opt$res.poststress,ds=min.epi,nm="Epi.dws.sc",folder="epi") +results <- scQuSAGE(sc10x.Epi,gs=gene.set,res.use=opt$res.poststress,ds=0,nm="Epi.dws.sc",folder="epi") sc10x.Epi <- results[[1]] results.cor.Epi.dws <- results[[2]] results.clust.Epi.dws.id <- results[[3]] @@ -284,7 +284,7 @@ gene.set <- c(gene.set,gene.set1) rm(gene.set1) gc() min.st <- min(table(sc10x.St@meta.data[,paste0("res",opt$res.poststress)])) -results <- scQuSAGE(sc10x.St,gs=gene.set,res.use=opt$res.poststress,ds=min.st,nm="St.dws.sc",folder="st") +results <- scQuSAGE(sc10x.St,gs=gene.set,res.use=opt$res.poststress,ds=0,nm="St.dws.sc",folder="st") sc10x.St <- results[[1]] results.cor.St.go <- results[[2]] results.clust.St.go.id <- results[[3]]