diff --git a/r.scripts/sc_PC.Score.NE.R b/r.scripts/sc_PC.Score.NE.R index cf4c6e423298bd29a8159f8c42a9d44a56830cf7..a18e63607a30f16529b64e75c954ef3a0b2e332e 100755 --- a/r.scripts/sc_PC.Score.NE.R +++ b/r.scripts/sc_PC.Score.NE.R @@ -105,7 +105,7 @@ plot(plot) dev.off() #subsample all cells (+NE) to better visualize their clustering -if (!is.na(opt$s)){ +if (!is.na(opt$sv)){ rnd <- sample(1:ncol(sc10x.Group@data),opt$sv) } else { rnd <- 1:ncol(sc10x.Group@data)