From 96eee38719fc1c07bf04cea1dc9495e8cec632ce Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Sun, 13 May 2018 15:38:32 -0500
Subject: [PATCH] Update D17 bash script

---
 bash.scripts/sc_FullAnalysis-D17PrF.sh | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/bash.scripts/sc_FullAnalysis-D17PrF.sh b/bash.scripts/sc_FullAnalysis-D17PrF.sh
index b7566b9..8200e96 100755
--- a/bash.scripts/sc_FullAnalysis-D17PrF.sh
+++ b/bash.scripts/sc_FullAnalysis-D17PrF.sh
@@ -13,12 +13,12 @@ module load R/3.4.1-gccmkl
 Rscript ../r.scripts/sc_Demultiplex.R --p="D17PrF" --d=3
 Rscript ../r.scripts/sc_Seurat.Score.CellCycle.R --p="D17PrF"
 Rscript ../r.scripts/sc_QC.R --p="D17PrF"
-Rscript ../r.scripts/sc_Cluster.R --p="D17PrF"
-Rscript ../r.scripts/sc_PC.Score.Stress.R --p="D17PrF"
-Rscript ../r.scripts/sc_QuSAGE.Lineage.R --p="D17PrF"
-Rscript ../r.scripts/sc_LineageSubClust.R --p="D17PrF"
-Rscript ../r.scripts/sc_QuSAGE_EpiSubClust.R --p="D17PrF" --r=0.2
-Rscript ../r.scripts/sc_QuSAGE_StSubClust.R --p="D17PrF" --r=0.2
+Rscript ../r.scripts/sc_Cluster.R --p="D17PrF" --pc=0
+Rscript ../r.scripts/sc_PC.Score.Stress.R --p="D17PrF" --r=0.5 --pc=0
+Rscript ../r.scripts/sc_QuSAGE.Lineage.R --p="D17PrF" --r=0.1 --s=NA
+Rscript ../r.scripts/sc_LineageSubClust.R --p="D17PrF" --pc=0
+Rscript ../r.scripts/sc_QuSAGE_EpiSubClust.R --p="D17PrF" --r=0.1 --s=NA
+Rscript ../r.scripts/sc_QuSAGE_StSubClust.R --p="D17PrF" --r=0.1 --s=NA
 Rscript ../r.scripts/sc_MergeSubClust.R --p="D17PrF"
 Rscript ../r.scripts/sc_PC.Score.NE.R --p="D17PrF"
 Rscript ../r.scripts/sc_DEG.R --p="D17PrF"
-- 
GitLab