From 9588554a17e7a90699eea7087903fc1041c6a631 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 13 Jul 2018 11:45:36 -0500
Subject: [PATCH] Separate bash.scripts for 2 and 3 patient aggreagations
---
...sueMapper-DPrF.sh => sc_TissueMapper-DPrF2.sh} | 2 +-
bash.scripts/sc_TissueMapper-DPrF3.sh | 15 +++++++++++++++
2 files changed, 16 insertions(+), 1 deletion(-)
rename bash.scripts/{sc_TissueMapper-DPrF.sh => sc_TissueMapper-DPrF2.sh} (75%)
create mode 100644 bash.scripts/sc_TissueMapper-DPrF3.sh
diff --git a/bash.scripts/sc_TissueMapper-DPrF.sh b/bash.scripts/sc_TissueMapper-DPrF2.sh
similarity index 75%
rename from bash.scripts/sc_TissueMapper-DPrF.sh
rename to bash.scripts/sc_TissueMapper-DPrF2.sh
index ae34cb3..ed180a1 100644
--- a/bash.scripts/sc_TissueMapper-DPrF.sh
+++ b/bash.scripts/sc_TissueMapper-DPrF2.sh
@@ -10,6 +10,6 @@
module load R/3.4.1-gccmkl
-Rscript ../r.scripts/sc-TissueMapper_RUN.D.R
+Rscript ../r.scripts/sc-TissueMapper_RUN.D2.R
Rscript ../r.scripts/sc-TissueMapper_RUN.D.diy.R
Rscript ../r.scripts/sc-TissueMapper_RUN.D.pseudotime.R
\ No newline at end of file
diff --git a/bash.scripts/sc_TissueMapper-DPrF3.sh b/bash.scripts/sc_TissueMapper-DPrF3.sh
new file mode 100644
index 0000000..557111e
--- /dev/null
+++ b/bash.scripts/sc_TissueMapper-DPrF3.sh
@@ -0,0 +1,15 @@
+#!/bin/bash
+#SBATCH --job-name R_FullAnalysis
+#SBATCH -p 256GB,256GBv1,384GB
+#SBATCH -N 1
+#SBATCH -t 7-0:0:0
+#SBATCH -o job_%j.out
+#SBATCH -e job_%j.out
+#SBATCH --mail-type ALL
+#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
+
+module load R/3.4.1-gccmkl
+
+Rscript ../r.scripts/sc-TissueMapper_RUN.D3.R
+#Rscript ../r.scripts/sc-TissueMapper_RUN.D.diy.R
+#Rscript ../r.scripts/sc-TissueMapper_RUN.D.pseudotime.R
\ No newline at end of file
--
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