From 7b8111548daa9f746612980a667a2ea9ddb552a0 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 9 May 2018 12:16:24 -0500
Subject: [PATCH] Update bash script FullAnalysis for D17PrF to do higher res
 analysis

---
 bash.scripts/sc_FullAnalysis-D17PrF.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/bash.scripts/sc_FullAnalysis-D17PrF.sh b/bash.scripts/sc_FullAnalysis-D17PrF.sh
index dd21214..b7566b9 100755
--- a/bash.scripts/sc_FullAnalysis-D17PrF.sh
+++ b/bash.scripts/sc_FullAnalysis-D17PrF.sh
@@ -17,8 +17,8 @@ Rscript ../r.scripts/sc_Cluster.R --p="D17PrF"
 Rscript ../r.scripts/sc_PC.Score.Stress.R --p="D17PrF"
 Rscript ../r.scripts/sc_QuSAGE.Lineage.R --p="D17PrF"
 Rscript ../r.scripts/sc_LineageSubClust.R --p="D17PrF"
-Rscript ../r.scripts/sc_QuSAGE_EpiSubClust.R --p="D17PrF"
-Rscript ../r.scripts/sc_QuSAGE_StSubClust.R --p="D17PrF"
+Rscript ../r.scripts/sc_QuSAGE_EpiSubClust.R --p="D17PrF" --r=0.2
+Rscript ../r.scripts/sc_QuSAGE_StSubClust.R --p="D17PrF" --r=0.2
 Rscript ../r.scripts/sc_MergeSubClust.R --p="D17PrF"
 Rscript ../r.scripts/sc_PC.Score.NE.R --p="D17PrF"
 Rscript ../r.scripts/sc_DEG.R --p="D17PrF"
-- 
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