diff --git a/r.scripts/sc-TissueMapper_RUN.D.R b/r.scripts/sc-TissueMapper_RUN.D.R index c06032436956ba3984ece997f6b11102b18fbf32..1606107e3913520158ddb1b7e6adc8409d1ea7f2 100644 --- a/r.scripts/sc-TissueMapper_RUN.D.R +++ b/r.scripts/sc-TissueMapper_RUN.D.R @@ -374,8 +374,14 @@ for (i in ls(pattern="^genes.deg")){ write.table(get(i),file=paste0("./analysis/deg/",i,".csv"),row.names=TRUE,col.names=NA,append=FALSE,sep=",") } +save(list=ls(pattern="sc10x.Stress"),file="./analysis/sc10x.Stress.Rda") +rm(list=ls(pattern="sc10x.Stress")) save(list=ls(pattern="^genes.deg"),file="./analysis/DEG.Rda") rm(list=ls(pattern="^genes.deg")) +save(list=ls(pattern="sc10x.Epi"),file="./analysis/sc10x.Epi.Rda") +rm(list=ls(pattern="^sc10x.Epi")) +save(list=ls(pattern="sc10x.St"),file="./analysis/sc10x.St.Rda") +rm(list=ls(pattern="sc10x.St")) save(list=ls(pattern="^sc10x"),file="./analysis/sc10x.Rda") rm(list=ls(pattern="^sc10x")) save.image(file="./analysis/Data.RData") diff --git a/r.scripts/sc-TissueMapper_RUN.D17.R b/r.scripts/sc-TissueMapper_RUN.D17.R index d9240e17ae482d3c07632a6491f2cee015cf1680..9370de77876010c69550992feb8ac5aae6575aaa 100644 --- a/r.scripts/sc-TissueMapper_RUN.D17.R +++ b/r.scripts/sc-TissueMapper_RUN.D17.R @@ -390,12 +390,14 @@ rm(g) scCustHeatmap(sc10x.Epi,i="Epi.dws.sub",gs=c(genes.deg.BE.unique,genes.deg.LE.unique,genes.deg.OE1.unique,genes.deg.OE2.unique),g=c("BE","LE","OE1","OE2")) scCustHeatmap(sc10x.St,i="St.go",gs=c(genes.deg.Fib.unique,genes.deg.SM.unique,genes.deg.Endo.unique,genes.deg.OE2.unique,genes.deg.Leu.unique),g=c("Fib","SM","Endo","Leu")) +save(list=ls(pattern="sc10x.Stress"),file="./analysis/sc10x.Stress.Rda") +rm(list=ls(pattern="sc10x.Stress")) save(list=ls(pattern="^genes.deg"),file="./analysis/DEG.Rda") rm(list=ls(pattern="^genes.deg")) -save(list=ls(pattern="^sc10x.Epi"),file="./analysis/sc10x.Epi.Rda") +save(list=ls(pattern="sc10x.Epi"),file="./analysis/sc10x.Epi.Rda") rm(list=ls(pattern="^sc10x.Epi")) -save(list=ls(pattern="^sc10x.St"),file="./analysis/sc10x.St.Rda") -rm(list=ls(pattern="^sc10x.St")) +save(list=ls(pattern="sc10x.St"),file="./analysis/sc10x.St.Rda") +rm(list=ls(pattern="sc10x.St")) save(list=ls(pattern="^sc10x"),file="./analysis/sc10x.Rda") rm(list=ls(pattern="^sc10x")) save.image(file="./analysis/Data.RData") diff --git a/r.scripts/sc-TissueMapper_RUN.D27.R b/r.scripts/sc-TissueMapper_RUN.D27.R index 89fa46e34891048753e285ccfe6ee473c1959a47..252034b3db5d8886b201c86c8ac7d8b49a82fd5d 100644 --- a/r.scripts/sc-TissueMapper_RUN.D27.R +++ b/r.scripts/sc-TissueMapper_RUN.D27.R @@ -275,6 +275,14 @@ scTables(sc10x,i.1="samples",i.2="Merge_Epi.dws.sc_St.dws.sc") scTables(sc10x,i.1="samples",i.2="Merge_Epi.dws.sc_St.dws.sc_NE") scTables(sc10x,i.1="Merge_Epi.dws.sc_St.dws.sc_NE",i.2="Merge_Epi.dws.sc_St.dws.sc") +save(list=ls(pattern="sc10x.Stress"),file="./analysis/sc10x.Stress.Rda") +rm(list=ls(pattern="sc10x.Stress")) +save(list=ls(pattern="^genes.deg"),file="./analysis/DEG.Rda") +rm(list=ls(pattern="^genes.deg")) +save(list=ls(pattern="sc10x.Epi"),file="./analysis/sc10x.Epi.Rda") +rm(list=ls(pattern="^sc10x.Epi")) +save(list=ls(pattern="sc10x.St"),file="./analysis/sc10x.St.Rda") +rm(list=ls(pattern="sc10x.St")) save(list=ls(pattern="^sc10x"),file="./analysis/sc10x.Rda") rm(list=ls(pattern="^sc10x")) save.image(file="./analysis/Data.RData")