diff --git a/r.scripts/sc-TissueMapper_RUN.Pd.R b/r.scripts/sc-TissueMapper_RUN.Pd.R index f55a0bd1024ad202beeb9611e854639aeae5389e..43ddd2502e0210315f4d6ba47d8c1da7e2746463 100644 --- a/r.scripts/sc-TissueMapper_RUN.Pd.R +++ b/r.scripts/sc-TissueMapper_RUN.Pd.R @@ -387,7 +387,7 @@ gene.set <- c(gene.set,gene.set1) rm(gene.set1) rm(gene.orthog) gene.set <- lapply(gene.set,droplevels) -results.cor.Epi.MusLungHierarchy <- scQuSAGEsm(sc10x.Epi,gs=gene.set,ds=min.epi,nm="Epi.dws.sub_NE",folder="MusLungHierarchy") +results.cor.Epi.MusLungHierarchy <- scQuSAGEsm(sc10x.Epi,gs=gene.set,ds=0,nm="Epi.dws.sub_NE",folder="MusLungHierarchy") rm(gene.set) gene.set.c2.all <- read.gmt("./genesets/c2.all.v6.1.symbols.gmt")