From 5cb8b8449dc8877e05f4eff4b983784efba1a15c Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Fri, 2 Nov 2018 15:09:43 -0500
Subject: [PATCH] Update bash scripts, link data and use new R/3.4.1

---
 bash.scripts/sc_TissueMapper-D17_FACS.sh | 6 ++++--
 bash.scripts/sc_TissueMapper-D27_FACS.sh | 6 ++++--
 bash.scripts/sc_TissueMapper-Pd.sh       | 8 +++++---
 3 files changed, 13 insertions(+), 7 deletions(-)

diff --git a/bash.scripts/sc_TissueMapper-D17_FACS.sh b/bash.scripts/sc_TissueMapper-D17_FACS.sh
index a1b9e80..169f73d 100644
--- a/bash.scripts/sc_TissueMapper-D17_FACS.sh
+++ b/bash.scripts/sc_TissueMapper-D17_FACS.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
-#SBATCH --job-name R_FullAnalysis
+#SBATCH --job-name R_FullAnalysis.D17FACS
 #SBATCH -p 256GB,256GBv1,384GB
 #SBATCH -N 1
 #SBATCH -t 7-0:0:0
@@ -8,6 +8,8 @@
 #SBATCH --mail-type ALL
 #SBATCH --mail-user gervaise.henry@utsouthwestern.edu
 
-module load R/3.4.1-gccmkl
+module load R/3.4.1-gccmkl_20181025
+
+sh ./sc_LinkData.sh D17_FACS
 
 Rscript ../r.scripts/sc-TissueMapper_RUN.D17_FACS.R
diff --git a/bash.scripts/sc_TissueMapper-D27_FACS.sh b/bash.scripts/sc_TissueMapper-D27_FACS.sh
index 492d870..326afca 100644
--- a/bash.scripts/sc_TissueMapper-D27_FACS.sh
+++ b/bash.scripts/sc_TissueMapper-D27_FACS.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
-#SBATCH --job-name R_FullAnalysis
+#SBATCH --job-name R_FullAnalysis.D27FACS
 #SBATCH -p 256GB,256GBv1,384GB
 #SBATCH -N 1
 #SBATCH -t 7-0:0:0
@@ -8,6 +8,8 @@
 #SBATCH --mail-type ALL
 #SBATCH --mail-user gervaise.henry@utsouthwestern.edu
 
-module load R/3.4.1-gccmkl
+module load R/3.4.1-gccmkl_20181025
+
+sh ./sc_LinkData.sh D27_FACS
 
 Rscript ../r.scripts/sc-TissueMapper_RUN.D27_FACS.R
diff --git a/bash.scripts/sc_TissueMapper-Pd.sh b/bash.scripts/sc_TissueMapper-Pd.sh
index c75360c..4c4ef80 100644
--- a/bash.scripts/sc_TissueMapper-Pd.sh
+++ b/bash.scripts/sc_TissueMapper-Pd.sh
@@ -1,5 +1,5 @@
 #!/bin/bash
-#SBATCH --job-name R_FullAnalysis
+#SBATCH --job-name R_FullAnalysis.Pd
 #SBATCH -p 256GB,256GBv1,384GB
 #SBATCH -N 1
 #SBATCH -t 7-0:0:0
@@ -8,6 +8,8 @@
 #SBATCH --mail-type ALL
 #SBATCH --mail-user gervaise.henry@utsouthwestern.edu
 
-module load R/3.4.1-gccmkl
+module load R/3.4.1-gccmkl_20181025
 
-Rscript ../r.scripts/sc-TissueMapper_RUN.Pd.R
\ No newline at end of file
+sh ./sc_LinkData.sh Pd
+
+Rscript ../r.scripts/sc-TissueMapper_RUN.Pd.R
-- 
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