diff --git a/genesets/DEG_BE.csv b/genesets/DEG_BE.csv index 958ce598afbfc854b6e5bdd6cfa9cc7316f428e0..8ed265e1a03d3b750d0cedf6b8ee31aedb940ed4 100644 --- a/genesets/DEG_BE.csv +++ b/genesets/DEG_BE.csv @@ -14,23 +14,27 @@ "13","CAV2" "14","PDCD5" "15","MYC" -"16","PTRF" +"16","KRT7" "17","NCL" -"18","KRT7" -"19","NPM1" -"20","TUBB4B" +"18","NPM1" +"19","PTRF" +"20","S100A2" "21","ATP1B3" -"22","DST" -"23","RAN" +"22","RAN" +"23","TUBB4B" "24","EEF1B2" -"25","S100A2" -"26","PRMT1" -"27","SRSF3" -"28","PA2G4" -"29","AXL" +"25","PRMT1" +"26","PA2G4" +"27","DST" +"28","SRSF3" +"29","TUBA1B" "30","TUBA1C" -"31","TUBA1B" +"31","AXL" "32","RANBP1" "33","SRM" -"34","SSB" -"35","DEFB1" +"34","SNRPD1" +"35","SSB" +"36","ANXA3" +"37","EBNA1BP2" +"38","YBX3" +"39","DEFB1" diff --git a/genesets/DEG_Endo.csv b/genesets/DEG_Endo.csv index 0d59e2a3ccdda349e27b14d24c2561c471ab245d..385ac9642e9cc2a53cbbc763282fc99c0e99a6ad 100644 --- a/genesets/DEG_Endo.csv +++ b/genesets/DEG_Endo.csv @@ -1,78 +1,73 @@ "","x" "1","MMP1" "2","IFI27" -"3","HMOX1" -"4","SELE" +"3","SELE" +"4","HMOX1" "5","ACKR1" -"6","CLDN5" -"7","CD200" +"6","CD200" +"7","CLDN5" "8","CD93" "9","SH3BGRL3" -"10","PCAT19" -"11","RAI14" -"12","SPRY1" -"13","LCN6" -"14","TMSB10" -"15","WWTR1" -"16","CALCRL" -"17","CFLAR" +"10","SPRY1" +"11","PCAT19" +"12","RAI14" +"13","TMSB10" +"14","WWTR1" +"15","LCN6" +"16","S100A10" +"17","CALCRL" "18","ZNF385D" -"19","ASPH" -"20","VWF" -"21","TPM3" -"22","ECSCR.1" +"19","TCF4" +"20","CFLAR" +"21","VWF" +"22","TPM3" "23","PLVAP" -"24","ADGRL4" -"25","S100A10" -"26","NQO1" -"27","SLC7A11" +"24","ECSCR.1" +"25","ASPH" +"26","ADGRL4" +"27","SOX17" "28","MSN" -"29","RHOC" -"30","NOP10" -"31","BACE2" -"32","TM4SF18" -"33","RDX" -"34","CLIC1" -"35","SWAP70" -"36","DUSP6" -"37","MRPL33" -"38","PNP" -"39","MED24" -"40","CNKSR3" -"41","LMO2" -"42","MGST2" -"43","PPFIBP1" -"44","COL15A1" -"45","NEURL1B" -"46","CDC37" -"47","RNASE1" -"48","ZEB1" -"49","ST3GAL6" -"50","RAPGEF5" -"51","GCLM" -"52","SOX17" -"53","RPS18" +"29","SWAP70" +"30","RHOC" +"31","SLC7A11" +"32","DUSP6" +"33","BACE2" +"34","CNKSR3" +"35","NOP10" +"36","FXYD5" +"37","PPFIBP1" +"38","LMO2" +"39","TM4SF18" +"40","CLIC1" +"41","RNASE1" +"42","EMCN" +"43","FLT1" +"44","RAPGEF5" +"45","RPS18" +"46","ST3GAL6" +"47","RHOJ" +"48","IL3RA" +"49","CD59" +"50","MGST2" +"51","MED24" +"52","PNP" +"53","NEURL1B" "54","CDC42EP3" -"55","EMCN" -"56","IL3RA" -"57","RHOJ" -"58","FLT1" -"59","CD59" -"60","HSPA8" -"61","AFAP1L1" -"62","HLA-B" -"63","TRIB3" -"64","PGF" -"65","CARHSP1" -"66","ITM2A" -"67","ITGA2" -"68","RAB13" -"69","ARPC5L" -"70","TNPO1" -"71","SH3BP5" -"72","KLF2" -"73","JAG1" -"74","INSR" -"75","MMP10" -"76","CXCL2" -"77","ANGPT2" +"55","MRPL33" +"56","CDC37" +"57","COL15A1" +"58","ZEB1" +"59","CARHSP1" +"60","KLF2" +"61","ITM2A" +"62","ITGA2" +"63","PGF" +"64","LUZP1" +"65","ARPC5L" +"66","RAB13" +"67","ARHGAP29" +"68","PDLIM1" +"69","CXCL2" +"70","INSR" +"71","ANGPT2" +"72","SOCS3" diff --git a/genesets/DEG_Epi.csv b/genesets/DEG_Epi.csv index e924e5e577b396a282857a85ee317abaf8fcc7b4..c0a882188319e45e0b5693e31c3cd0e7981d1a83 100644 --- a/genesets/DEG_Epi.csv +++ b/genesets/DEG_Epi.csv @@ -3,69 +3,73 @@ "2","KRT19" "3","AQP3" "4","SFN" -"5","S100P" -"6","AZGP1" +"5","AZGP1" +"6","S100P" "7","KRT8" -"8","CD24" -"9","SPINT2" -"10","KRT18" -"11","KLF5" -"12","AGR2" +"8","SPINT2" +"9","CD24" +"10","AGR2" +"11","KRT18" +"12","KLF5" "13","S100A14" "14","S100A16" "15","ACTG1" -"16","CLDN7" -"17","ACTB" -"18","GSTP1" -"19","ANXA2" -"20","HMGA1" -"21","PERP" -"22","LAMB3" -"23","ANXA11" -"24","PLAU" -"25","S100A10" -"26","C15orf48" +"16","HMGA1" +"17","CLDN7" +"18","ACTB" +"19","GSTP1" +"20","ANXA2" +"21","S100A10" +"22","PLAU" +"23","ANXA1" +"24","PERP" +"25","LAMB3" +"26","ANXA11" "27","S100A11" -"28","PHLDA2" -"29","SLC14A1" -"30","TSPO" +"28","TSPO" +"29","LAMC2" +"30","SLC14A1" "31","CXCL16" -"32","MRPS6" -"33","MAL2" -"34","LAMC2" -"35","ANXA3" +"32","MAL2" +"33","MRPS6" +"34","CD9" +"35","VAMP8" "36","EPCAM" -"37","VAMP8" -"38","CD9" -"39","CD47" -"40","TXNIP" -"41","IFNGR2" -"42","ARHGAP29" -"43","SERINC2" -"44","MYL12B" -"45","TALDO1" -"46","EZR" -"47","PPDPF" +"37","SH3BGRL3" +"38","CEACAM1" +"39","TXNIP" +"40","IFNGR2" +"41","ARHGAP29" +"42","CD47" +"43","MALL" +"44","TALDO1" +"45","SERINC2" +"46","MYL12B" +"47","HEBP2" "48","MPZL2" -"49","GALNT3" -"50","JUP" -"51","LIMA1" -"52","SH3BGRL3" -"53","PHLDA3" -"54","NDUFV2" -"55","MYO6" -"56","ACTN4" -"57","TNFRSF21" -"58","HEBP2" -"59","TPM4" -"60","DSP" -"61","HINT1" +"49","PPDPF" +"50","EZR" +"51","TPM4" +"52","GALNT3" +"53","MYO6" +"54","HINT1" +"55","JUP" +"56","NDUFV2" +"57","ACTN4" +"58","PHLDA3" +"59","DSP" +"60","LIMA1" +"61","TNFRSF21" "62","MAST4" -"63","EHF" +"63","GCLM" "64","MAP3K13" -"65","DRAP1" -"66","MET" -"67","SDC4" -"68","KLK11" -"69","SH3YL1" -"70","F3" +"65","KLK11" +"66","EHF" +"67","MET" +"68","DRAP1" +"69","ITGA2" +"70","HMGN1" +"71","CDH1" +"72","MYL12A" +"73","COX4I1" +"74","F3" diff --git a/genesets/DEG_Fib.csv b/genesets/DEG_Fib.csv index 5329bb663bed2de74dbce55622468291d3f23ecc..46b537d4e74ed7147b33c5511445e841bfab730c 100644 --- a/genesets/DEG_Fib.csv +++ b/genesets/DEG_Fib.csv @@ -13,65 +13,58 @@ "12","CFD" "13","PDPN" "14","FGF2" -"15","MEG3" +"15","MFAP4" "16","ANXA5" -"17","MFAP4" -"18","G0S2" -"19","RHOBTB3" -"20","LTBP4" -"21","HMGA1" -"22","TNFAIP6" -"23","SFRP2" -"24","PLAUR" +"17","G0S2" +"18","RHOBTB3" +"19","LTBP4" +"20","HMGA1" +"21","TNFAIP6" +"22","SFRP2" +"23","PLAUR" +"24","FGF7" "25","S100A11" -"26","FGF7" -"27","SNCA" -"28","PLAT" -"29","KCNK1" +"26","PLAT" +"27","KCNK1" +"28","DNAJB9" +"29","MPZL1" "30","TNFRSF12A" -"31","DNAJB9" -"32","MPZL1" +"31","ATP2B1" +"32","SEC62" "33","FBLN2" -"34","SEC62" +"34","GSTM3" "35","LPAR1" -"36","GSTM3" -"37","GYPC" +"36","GYPC" +"37","PDGFRA" "38","BDKRB2" -"39","PDGFRA" -"40","REEP5" -"41","CLU" -"42","ARSG" -"43","RND3" -"44","SCARB2" -"45","SPOCK3" -"46","CTSK" -"47","GJA1" -"48","VCAN" -"49","SLC25A37" -"50","DPT" -"51","MYDGF" -"52","CXCL8" -"53","UAP1" -"54","PDIA6" -"55","HSP90B1" -"56","HSPA5" -"57","SPON2" -"58","MATN2" -"59","GPM6B" -"60","CREB5" -"61","EFEMP1" -"62","MANF" -"63","FST" -"64","CXCL1" -"65","IL33" -"66","MGP" -"67","CD55" -"68","SDF2L1" -"69","GSN" -"70","SFRP1" -"71","THBS2" -"72","C7" -"73","IL6" -"74","THAP2" -"75","HERPUD1" -"76","A2M" +"39","REEP5" +"40","RND3" +"41","SPOCK3" +"42","CTSK" +"43","ARSG" +"44","GJA1" +"45","SLC25A37" +"46","VCAN" +"47","DPT" +"48","UAP1" +"49","CXCL8" +"50","PDIA6" +"51","HSP90B1" +"52","SPON2" +"53","MATN2" +"54","HSPA5" +"55","CREB5" +"56","EFEMP1" +"57","MANF" +"58","FST" +"59","MGP" +"60","IL33" +"61","SFRP1" +"62","CD55" +"63","SDF2L1" +"64","THBS2" +"65","C7" +"66","IL6" +"67","THAP2" +"68","HERPUD1" +"69","A2M" diff --git a/genesets/DEG_LE.csv b/genesets/DEG_LE.csv index 6866c8bf4c3cb6739dddca611129e1454d39d032..1cae18bdfbdad48384736dc95db52d470fd27075 100644 --- a/genesets/DEG_LE.csv +++ b/genesets/DEG_LE.csv @@ -3,82 +3,81 @@ "2","KLK3" "3","ACPP" "4","PLA2G2A" -"5","MT1X" -"6","KLK2" +"5","KLK2" +"6","MT1X" "7","MT1G" "8","MT2A" -"9","CLDN3" -"10","NEAT1" -"11","TSPAN8" +"9","TSPAN8" +"10","CLDN3" +"11","RDH11" "12","SEC11C" -"13","NAMPT" -"14","RDH11" -"15","TMC5" -"16","GLRX" -"17","DHRS7" -"18","IL6ST" -"19","VMP1" +"13","NEAT1" +"14","NAMPT" +"15","DHRS7" +"16","TMC5" +"17","VMP1" +"18","GLRX" +"19","IL6ST" "20","SMIM14" -"21","H2AFJ" -"22","CLDN4" -"23","HMGCS1" -"24","TMPRSS2" -"25","CIB1" -"26","EMP1" -"27","DBI" -"28","LINC00844" +"21","TMPRSS2" +"22","GP2" +"23","H2AFJ" +"24","LINC00844" +"25","CLDN4" +"26","ERRFI1" +"27","HMGCS1" +"28","ID1" "29","TPD52" -"30","RNF144B" -"31","DSC2" -"32","GP2" -"33","ELL2" -"34","ALDH1A3" -"35","IDH2" -"36","PPP3CA" -"37","PMEPA1" -"38","ERRFI1" -"39","RAB27B" -"40","UQCRQ" -"41","FXYD3" -"42","CRYAB" -"43","RPS27L" -"44","MT1F" -"45","LMO7" -"46","SOCS2" -"47","RNF213" -"48","SARAF" -"49","ELOVL5" -"50","RASEF" -"51","SLC44A4" -"52","SLC39A6" -"53","KLK4" -"54","SH3BP4" -"55","GDE1" -"56","LBH" -"57","FLJ20021" +"30","PPP3CA" +"31","PMEPA1" +"32","RNF144B" +"33","DSC2" +"34","CIB1" +"35","UQCRQ" +"36","ZFP36" +"37","ELL2" +"38","FXYD3" +"39","KLK4" +"40","ELOVL5" +"41","RAB27B" +"42","SOCS2" +"43","IDH2" +"44","SLC39A6" +"45","ALDH1A3" +"46","SLC44A4" +"47","RASEF" +"48","SH3BP4" +"49","NGFRAP1" +"50","MPC2" +"51","RNF213" +"52","SLC12A2" +"53","FLJ20021" +"54","PLPP1" +"55","LBH" +"56","MEAF6" +"57","TSTD1" "58","SERF2" -"59","RDH10" -"60","MALAT1" -"61","ST6GAL1" -"62","ABHD2" -"63","NGFRAP1" -"64","TSTD1" -"65","PART1" +"59","PART1" +"60","SNRPN" +"61","GDE1" +"62","STEAP2" +"63","PDE4B" +"64","MALAT1" +"65","ABHD2" "66","LCP1" -"67","MEAF6" -"68","SLC12A2" +"67","RDH10" +"68","ST6GAL1" "69","IL1R1" -"70","MPC2" -"71","SNRPN" +"70","NDUFA4" +"71","BRI3" "72","FRMD4B" -"73","F11R" -"74","ATP1A1" -"75","SEMA4B" -"76","AIM1" -"77","MACF1" -"78","ZFP36" -"79","TGIF1" -"80","ID1" -"81","MALL" -"82","CEACAM1" -"83","BIRC3" +"73","STAT3" +"74","TMEM59" +"75","SORD" +"76","LMO7" +"77","PNRC1" +"78","EFNA1" +"79","ARID5B" +"80","TGIF1" +"81","EMP1" +"82","PHLDA2" diff --git a/genesets/DEG_Leu.csv b/genesets/DEG_Leu.csv index 7c708b6b817a9f7d21dd46e9cbff8f352036716f..cf7f4acee37be5785caf042c24ccd72ea6875dd4 100644 --- a/genesets/DEG_Leu.csv +++ b/genesets/DEG_Leu.csv @@ -1,134 +1,87 @@ "","x" -"1","C1QA" -"2","TYROBP" -"3","C1QB" -"4","RGS1" -"5","FCER1G" -"6","LAPTM5" -"7","CCL3" -"8","EREG" -"9","GPR183" -"10","C1QC" -"11","CST7" -"12","RNASE6" -"13","CXCR4" -"14","SPI1" -"15","CYTIP" -"16","CCR7" -"17","OLR1" -"18","AIF1" -"19","PTPRC" -"20","IGSF6" -"21","LST1" -"22","MS4A6A" -"23","MS4A7" -"24","ALOX5AP" -"25","EVI2B" -"26","SAMSN1" -"27","CD48" -"28","LILRB4" -"29","ITGAX" -"30","C5AR1" -"31","VSIG4" -"32","CD37" -"33","FCGR2A" -"34","ST8SIA4" -"35","ITGB2" -"36","CD53" -"37","CSF2RA" -"38","MS4A4A" -"39","PLA2G7" -"40","FGL2" -"41","CD14" -"42","FAM26F" -"43","LY96" -"44","SERPINB9" -"45","KYNU" -"46","FAM49A" -"47","LYZ" -"48","ABCA1" -"49","IFI30" -"50","SLC16A10" -"51","GPSM3" -"52","APOC1" -"53","SLC11A1" -"54","TGFBI" -"55","HLA-DMB" -"56","CD83" -"57","DOCK4" -"58","PDE4DIP" -"59","ARRB2" -"60","RNF130" -"61","PFKFB3" -"62","NINJ1" -"63","C1orf54" -"64","ACP5" -"65","VIM" -"66","CARD16" -"67","OGFRL1" -"68","WIPF1" -"69","MAFB" -"70","NBN" -"71","JARID2" -"72","APOE" -"73","TPP1" -"74","SMAP2" -"75","RGS2" -"76","LGALS1" -"77","UPP1" -"78","STX11" -"79","CD68" -"80","PTPRE" -"81","CTSD" -"82","ARHGDIB" -"83","RALA" -"84","ZEB2" -"85","ATP6V1F" -"86","BTG1" -"87","CTSL" -"88","SLC2A3" -"89","RHOG" -"90","ASAH1" -"91","THBS1" -"92","GNA13" -"93","RNASET2" -"94","GPX1" -"95","SLC16A3" -"96","PSAP" -"97","DDIT4" -"98","SEC11A" -"99","REL" -"100","HLA-DMA" -"101","ARL4C" -"102","C6orf48" -"103","GPR137B" -"104","CREG1" -"105","SDC2" -"106","CYBA" -"107","CTSS" -"108","HIST3H2A" -"109","FCGRT" -"110","IL1R2" -"111","CLEC2B" -"112","HIF1A" -"113","CTSB" -"114","SLC44A1" -"115","PID1" -"116","SLC6A6" -"117","CXCL3" -"118","ID2" -"119","GPX4" -"120","CST3" -"121","SGK1" -"122","ARL6IP5" -"123","SDCBP" -"124","ATP13A3" -"125","FAM49B" -"126","CMTM6" -"127","RGS10" -"128","CARD19" -"129","RIPK2" -"130","RILPL2" -"131","GRB2" -"132","GSTO1" -"133","AREG" +"1","PLP1" +"2","S100B" +"3","C1QA" +"4","TYROBP" +"5","C1QB" +"6","RGS1" +"7","FGL2" +"8","NRXN1" +"9","SCN7A" +"10","LAPTM5" +"11","CDH19" +"12","CADM2" +"13","GPR183" +"14","CHL1" +"15","SPP1" +"16","FCER1G" +"17","ARHGAP24" +"18","IL34" +"19","FXYD1" +"20","VIM" +"21","VWA1" +"22","LGI4" +"23","PMP22" +"24","SPARC" +"25","LGALS1" +"26","TMEM176A" +"27","PRKCDBP" +"28","GPM6B" +"29","CAB39L" +"30","ALDH1A1" +"31","SEMA3B" +"32","ZEB2" +"33","RNF130" +"34","CST3" +"35","LAMA4" +"36","NINJ1" +"37","ANKRD28" +"38","MTURN" +"39","PSAP" +"40","STMN1" +"41","BPGM" +"42","CTSD" +"43","ATP6V1F" +"44","ABL2" +"45","NDRG2" +"46","CTSL" +"47","GPR137B" +"48","HMGB2" +"49","ITGB1BP1" +"50","S100A4" +"51","TSC22D3" +"52","DKK3" +"53","HTATIP2" +"54","ARL6IP5" +"55","ADD3" +"56","EID1" +"57","BTG1" +"58","VAPA" +"59","HLA-DMA" +"60","FAM134B" +"61","TBCB" +"62","RARRES2" +"63","GPX4" +"64","IGFBP7" +"65","SDC2" +"66","SNX3" +"67","VAMP2" +"68","CLIC4" +"69","ITGB8" +"70","ARL2" +"71","WSB1" +"72","EMP2" +"73","MARCKS" +"74","PLA2G16" +"75","COMT" +"76","BNIP3L" +"77","ID2" +"78","FLOT1" +"79","SERPING1" +"80","SEC11A" +"81","LMO4" +"82","THBS1" +"83","CD44" +"84","VAMP5" +"85","VGLL4" +"86","LAMP2" diff --git a/genesets/DEG_NE.csv b/genesets/DEG_NE.csv index 0c7b4312ec9b6b460a8eb0aa1ac5fc7a34ee7c04..cde85c1be32dcaba03380c6557b96dd06a2d12b9 100644 --- a/genesets/DEG_NE.csv +++ b/genesets/DEG_NE.csv @@ -8,103 +8,105 @@ "7","TPH1" "8","CALCA" "9","PHGR1" -"10","KLK12" -"11","RGS4" -"12","SCG3" -"13","JAKMIP2" -"14","HEPACAM2" +"10","RGS4" +"11","SCG3" +"12","JAKMIP2" +"13","HEPACAM2" +"14","MAOB" "15","ERICH3" -"16","MAOB" -"17","SLC18A1" -"18","NELL2" -"19","RIMBP2" +"16","SLC18A1" +"17","NELL2" +"18","RIMBP2" +"19","KLK12" "20","NKAIN2" "21","NELL1" "22","FIBCD1" -"23","AC013463.2" +"23","LECT1" "24","TAGLN3" -"25","SCGN" +"25","AC013463.2" "26","SYP" -"27","SLC38A11" -"28","TMEM176B" -"29","CACNA1A" +"27","CACNA1A" +"28","SLC38A11" +"29","SCGN" "30","OVOS2" "31","ESPN" "32","CHGB" -"33","PRUNE2" -"34","UCHL1" +"33","UCHL1" +"34","BEX1" "35","AC034243.1" -"36","BEX1" +"36","PCSK1N" "37","PLEKHB1" -"38","TMEM178A" -"39","C1QTNF4" -"40","SYT1" -"41","PCSK1N" -"42","RAB17" -"43","VIPR1" -"44","TUBB2B" -"45","THSD7A" -"46","DNAJC12" -"47","NME7" -"48","DNER" -"49","MYEF2" -"50","SPATA6" -"51","LINC01089" -"52","C3orf14" -"53","ATP6V0E2" -"54","C4orf48" -"55","KANSL1L" -"56","RP11-489E7.4" -"57","IGFBP5" -"58","TET2" -"59","SMOC2" -"60","MAP9" -"61","TFF3" -"62","IZUMO4" -"63","C11orf49" -"64","PKIB" -"65","DMAP1" -"66","SPG11" -"67","TTC32" -"68","RP11-423H2.3" -"69","ITPR2" -"70","QPCT" -"71","CEP164" -"72","N4BP2" -"73","NUDT16L1" -"74","RNF167" -"75","TP53BP1" -"76","U2AF1L4" -"77","NAAA" -"78","EZH1" -"79","CCDC53" -"80","RP5-1042K10.10" -"81","QDPR" -"82","ABHD14A" -"83","COG3" -"84","PLS1" -"85","GUF1" -"86","PTPN4" -"87","ARRDC4" -"88","DAPL1" -"89","C22orf39" -"90","ATPIF1" -"91","SEC22C" -"92","MAGED1" -"93","FLCN" -"94","TMEM199" -"95","MAP1B" -"96","ZSWIM7" -"97","ABL2" -"98","C1orf132" -"99","RHBDD2" -"100","TMED4" -"101","IL20RA" -"102","CYB5B" -"103","GADD45G" -"104","ECD" -"105","ZNF428" -"106","RASD1" -"107","PNKD" -"108","DCTN3" -"109","ZBTB20" +"38","C1QTNF4" +"39","HOXA11" +"40","PRUNE2" +"41","TMEM178A" +"42","DNAJC12" +"43","TUBB2B" +"44","RAB17" +"45","KRT80" +"46","THSD7A" +"47","SYT1" +"48","VIPR1" +"49","RP11-481J2.4" +"50","NME7" +"51","PEG10" +"52","DNER" +"53","SPATA6" +"54","MYEF2" +"55","CHIC1" +"56","LINC01089" +"57","C3orf14" +"58","KANSL1L" +"59","RP11-489E7.4" +"60","C4orf48" +"61","IFT88" +"62","PRKCE" +"63","IGFBP5" +"64","TET2" +"65","ATP6V0E2" +"66","FRMD4A" +"67","SMOC2" +"68","MAP9" +"69","IZUMO4" +"70","TFF3" +"71","C11orf49" +"72","PGPEP1" +"73","DMAP1" +"74","ZNF428" +"75","PKIB" +"76","ZBTB20" +"77","TTC32" +"78","SPG11" +"79","QPCT" +"80","ITPR2" +"81","CEP164" +"82","RHBDD2" +"83","RP11-423H2.3" +"84","ATPIF1" +"85","TFIP11" +"86","N4BP2" +"87","RNF167" +"88","TP53BP1" +"89","U2AF1L4" +"90","AP1S1" +"91","MOSPD1" +"92","EZH1" +"93","NUDT16L1" +"94","RP5-1042K10.10" +"95","CCDC53" +"96","SNAP29" +"97","FAM174A" +"98","FRG1" +"99","ZNF451" +"100","PLS1" +"101","NAAA" +"102","GUF1" +"103","COG3" +"104","PTPN4" +"105","ABHD14A" +"106","DAPL1" +"107","ARRDC4" +"108","QDPR" +"109","GATA2" +"110","C22orf39" +"111","APOA1BP" diff --git a/genesets/DEG_OE1.csv b/genesets/DEG_OE1.csv index bbf40453189d14091d4cc41611349fe49e0bc20e..0be9f109cabaa453233ed921115e01be2a320868 100644 --- a/genesets/DEG_OE1.csv +++ b/genesets/DEG_OE1.csv @@ -3,51 +3,51 @@ "2","LCN2" "3","PIGR" "4","OLFM4" -"5","FCGBP" -"6","LTF" -"7","GDF15" -"8","WFDC2" -"9","FAM3D" -"10","SLPI" +"5","SLPI" +"6","FCGBP" +"7","WFDC2" +"8","LTF" +"9","GDF15" +"10","FAM3D" "11","PI3" "12","DUOXA2" -"13","MMP7" -"14","CXCL17" -"15","SERPINB3" -"16","CXCL6" -"17","ZG16B" -"18","ANKRD36C" -"19","GLUL" -"20","RHOV" +"13","C15orf48" +"14","MMP7" +"15","CXCL17" +"16","SERPINB3" +"17","CXCL6" +"18","GLUL" +"19","ANKRD36C" +"20","ZG16B" "21","DUSP5" -"22","CRABP2" -"23","ADGRF1" -"24","CEACAM6" +"22","RHOV" +"23","CRABP2" +"24","ADGRF1" "25","ATP1B1" -"26","ASS1" -"27","TMEM45B" -"28","S100A6" -"29","TSPAN1" +"26","CEACAM6" +"27","S100A6" +"28","ASS1" +"29","TMEM45B" "30","CP" -"31","ELF3" -"32","BIK" -"33","PDZK1IP1" +"31","PDZK1IP1" +"32","TSPAN1" +"33","BIK" "34","RARRES3" -"35","VSIG2" +"35","ELF3" "36","AGR3" -"37","FOXO3" +"37","VSIG2" "38","SRD5A3" "39","CEACAM5" -"40","LINC01207" -"41","RNF39" -"42","HIGD1A" -"43","CYP3A5" -"44","TSPAN13" -"45","HIST1H2BC" -"46","CCL28" -"47","HIST1H2AC" -"48","RAB11FIP1" -"49","TMEM165" -"50","ANXA1" -"51","HIST1H1C" -"52","ZFP36L1" +"40","RNF39" +"41","FOXO3" +"42","CCL28" +"43","HIST1H2AC" +"44","HIGD1A" +"45","RAB11FIP1" +"46","CYP3A5" +"47","TSPAN13" +"48","LINC01207" +"49","HIST1H2BC" +"50","TMEM165" +"51","ZFP36L1" +"52","HIST1H1C" diff --git a/genesets/DEG_OE2.csv b/genesets/DEG_OE2.csv index 200739e61e70a963048d47edc52fa41adb91009c..d459780e5deb421ff62eea8a870a0180a0b4542b 100644 --- a/genesets/DEG_OE2.csv +++ b/genesets/DEG_OE2.csv @@ -7,12 +7,12 @@ "6","FABP5" "7","KRT13" "8","SDCBP2" -"9","KIAA1551" -"10","UBR4" -"11","HSPA1B" -"12","SDC1" +"9","UBR4" +"10","KIAA1551" +"11","SDC1" +"12","HECTD1" "13","IL1RN" -"14","HECTD1" +"14","AKR1C3" "15","LYPD3" -"16","AKR1C3" +"16","HSPA1B" "17","HSPA1A" diff --git a/genesets/DEG_SM.csv b/genesets/DEG_SM.csv index 495d45ad6f651a6f97c8753210f1d2ce4fbbdd4d..4801f6b9d5ec0dbdec93ff3875d8c5ede4ac8e58 100644 --- a/genesets/DEG_SM.csv +++ b/genesets/DEG_SM.csv @@ -7,46 +7,44 @@ "6","EPAS1" "7","ADAMTS4" "8","IFITM3" -"9","TINAGL1" -"10","ADRA2A" -"11","STEAP4" -"12","IFITM2" -"13","MT1A" -"14","NGF" -"15","ACTA2" -"16","MCAM" -"17","PDK4" -"18","KCNE4" +"9","GAPDH" +"10","TINAGL1" +"11","ADRA2A" +"12","STEAP4" +"13","IFITM2" +"14","MT1A" +"15","NGF" +"16","ACTA2" +"17","MCAM" +"18","PDK4" "19","MTHFD2" -"20","CRISPLD2" -"21","FOXC2" -"22","ADAMTS1" -"23","PROCR" -"24","HES4" -"25","SYNPO2" +"20","KCNE4" +"21","PROCR" +"22","FOXC2" +"23","CRISPLD2" +"24","ADAMTS1" +"25","PPP1R14A" "26","PDGFRB" -"27","TIMP3" -"28","PPP1R14A" -"29","TPM1" -"30","COL4A1" -"31","RGS16" -"32","PI15" -"33","MYLK" -"34","LPP" -"35","CDKN1A" +"27","HES4" +"28","TIMP3" +"29","SYNPO2" +"30","TPM1" +"31","COL4A1" +"32","LPP" +"33","PI15" +"34","RGS16" +"35","MYLK" "36","ZBTB38" -"37","SLC25A4" +"37","CDKN1A" "38","CTSC" -"39","ISG15" -"40","HIPK2" -"41","NDUFS2" +"39","SLC25A4" +"40","ISG15" +"41","HIPK2" "42","C2orf40" -"43","HES1" -"44","HSPB1" -"45","NR2F2" -"46","ZFHX3" -"47","ZNF503" -"48","C8orf4" -"49","KLF6" -"50","SNAI2" -"51","RHOB" +"43","NDUFS2" +"44","HES1" +"45","HSPB1" +"46","NR2F2" +"47","ACTB" +"48","ZNF503" +"49","RHOB" diff --git a/genesets/DEG_St.csv b/genesets/DEG_St.csv index 2796b28a09d741b0c53c0f5a185d1236f29ae2c0..59bdf2b2f3ef80b1e9e6903cd83deceaa9ffd8ac 100644 --- a/genesets/DEG_St.csv +++ b/genesets/DEG_St.csv @@ -4,109 +4,119 @@ "3","SPARCL1" "4","VIM" "5","IGFBP5" -"6","CSF3" -"7","TIMP1" -"8","LGALS1" -"9","STC1" -"10","GEM" -"11","CRYAB" -"12","PLPP3" +"6","TIMP1" +"7","GEM" +"8","CSF3" +"9","LGALS1" +"10","IGFBP6" +"11","PLPP3" +"12","CRYAB" "13","SERPINE1" -"14","IGFBP6" +"14","C1S" "15","TFPI" -"16","C1S" -"17","CREM" -"18","C1R" -"19","APOE" +"16","CREM" +"17","C1R" +"18","APOE" +"19","IER3" "20","AKAP12" -"21","IER3" -"22","PMP22" -"23","SRGN" -"24","COL6A2" -"25","SERPING1" -"26","CTSL" -"27","SPARC" +"21","COL6A2" +"22","MEG3" +"23","SERPING1" +"24","PMP22" +"25","CTSL" +"26","GSN" +"27","PHLDA1" "28","BNIP3L" -"29","MT2A" -"30","PHLDA1" -"31","S100A4" -"32","EDNRB" +"29","SRGN" +"30","SPARC" +"31","MT2A" +"32","S100A4" "33","IGFBP4" -"34","ADAMTS9" -"35","ICAM1" -"36","GNG11" -"37","MAP1B" -"38","PRRX1" -"39","LIF" -"40","SELM" +"34","EDNRB" +"35","PRRX1" +"36","ICAM1" +"37","LIF" +"38","AKR1C1" +"39","SOD3" +"40","GNG11" "41","ID2" -"42","TCF4" -"43","AKR1C1" +"42","MAP1B" +"43","TPM2" "44","MFGE8" -"45","SOD3" -"46","BGN" -"47","HLA-DRB1" -"48","TPM2" -"49","PKIG" -"50","GSTO1" -"51","COL6A1" -"52","UBB" -"53","CEBPB" -"54","VASN" -"55","SDC2" -"56","SLC2A3" -"57","PTPN1" -"58","LAPTM4A" -"59","NFKBIA" -"60","FTL" -"61","NR4A1" -"62","PLIN2" -"63","NR4A2" -"64","GPX3" -"65","LIMS1" -"66","DDIT4" -"67","BTG1" -"68","CSRP2" -"69","FGFR1" +"45","SELM" +"46","ADAMTS9" +"47","BGN" +"48","SERPINF1" +"49","CEBPB" +"50","COL6A1" +"51","LMCD1" +"52","GSTO1" +"53","NFKBIA" +"54","SDC2" +"55","VASN" +"56","PTPN1" +"57","SLC2A3" +"58","DDIT4" +"59","LAPTM4A" +"60","C8orf4" +"61","NR4A2" +"62","PKIG" +"63","UBB" +"64","NR4A1" +"65","PLIN2" +"66","BTG1" +"67","GPX3" +"68","FGFR1" +"69","LIMS1" "70","PCOLCE" "71","AEBP1" -"72","RHOQ" -"73","GLA" -"74","CST3" -"75","EIF1B" +"72","CSRP2" +"73","RHOQ" +"74","EIF1B" +"75","CST3" "76","FXYD6" -"77","PNPLA8" -"78","PRKAR1A" -"79","WBP5" -"80","ARID5B" -"81","SLC39A14" -"82","NDRG1" -"83","NRP2" -"84","LMO4" -"85","KLF9" -"86","MAFG" -"87","AHCYL1" -"88","RARRES2" -"89","THBS1" -"90","OAT" -"91","ANKRD28" -"92","GLIS3" -"93","IL32" -"94","NINJ1" -"95","ARID5A" -"96","CFH" -"97","TBX3" +"77","GLA" +"78","ARID5B" +"79","PNPLA8" +"80","LMO4" +"81","RARRES2" +"82","SLC39A14" +"83","PRKAR1A" +"84","AHCYL1" +"85","THBS1" +"86","WBP5" +"87","OAT" +"88","IL32" +"89","KLF9" +"90","TBX3" +"91","CFH" +"92","ZEB2" +"93","NINJ1" +"94","GLIS3" +"95","GABARAPL1" +"96","TIMP2" +"97","GPM6B" "98","BST2" -"99","GABARAPL1" -"100","SERPINH1" -"101","INSIG1" -"102","PTP4A1" -"103","ID3" -"104","SERPINF1" -"105","GADD45B" -"106","ZFP36" -"107","CXCL3" -"108","TFPI2" -"109","TM4SF1" -"110","HSPA1A" -"111","DUSP1" +"99","FTL" +"100","PRNP" +"101","ARID5A" +"102","MAFG" +"103","PNRC1" +"104","ANKRD28" +"105","ERN1" +"106","COL4A2" +"107","MGLL" +"108","CALU" +"109","LDHA" +"110","INSIG1" +"111","PTP4A1" +"112","ID3" +"113","GADD45B" +"114","JUNB" +"115","CALD1" +"116","TFPI2" +"117","ZFP36" +"118","DUSP1" +"119","HSPA1A" +"120","TM4SF1" +"121","MYL9" diff --git a/genesets/DWS.scNE.txt b/genesets/DWS.scNE.txt index 78f2c8272428a40f5bdc4bacc7cb7c85ffb53b63..90acb353ca7075bd558db5401211aa0ef81d0e77 100644 --- a/genesets/DWS.scNE.txt +++ b/genesets/DWS.scNE.txt @@ -7,106 +7,110 @@ LY6H TPH1 CALCA PHGR1 -KLK12 RGS4 SCG3 JAKMIP2 HEPACAM2 -ERICH3 MAOB +ERICH3 SLC18A1 NELL2 RIMBP2 +KLK12 NKAIN2 NELL1 FIBCD1 -AC013463.2 +LECT1 TAGLN3 -SCGN +AC013463.2 SYP +CACNA1A SLC38A11 +SCGN TMEM176B -CACNA1A OVOS2 ESPN TPPP3 CHGB -PRUNE2 UCHL1 -AC034243.1 BEX1 +AC034243.1 +PCSK1N PLEKHB1 -TMEM178A C1QTNF4 -SYT1 -PCSK1N -RAB17 -VIPR1 +HOXA11 +PRUNE2 +TMEM178A +DNAJC12 TUBB2B +RAB17 +KRT80 THSD7A -DNAJC12 +SYT1 +VIPR1 +RP11-481J2.4 NME7 +PEG10 DNER -MYEF2 SPATA6 +MYEF2 +CHIC1 LINC01089 C3orf14 -ATP6V0E2 -C4orf48 KANSL1L RP11-489E7.4 +C4orf48 +IFT88 +PRKCE IGFBP5 TET2 +ATP6V0E2 +FRMD4A SMOC2 MAP9 -TFF3 IZUMO4 +TFF3 C11orf49 -PKIB +PGPEP1 DMAP1 -SPG11 +ZNF428 +PKIB +ZBTB20 TTC32 -RP11-423H2.3 -ITPR2 +SPG11 QPCT +ITPR2 CEP164 +RHBDD2 +RP11-423H2.3 +ATPIF1 +TFIP11 N4BP2 -NUDT16L1 RNF167 -SPOCK1 TP53BP1 U2AF1L4 -NAAA +AP1S1 +MOSPD1 EZH1 -CCDC53 +NUDT16L1 RP5-1042K10.10 -QDPR -ABHD14A -COG3 +CCDC53 +SNAP29 +FAM174A +SPOCK1 +FRG1 +ZNF451 PLS1 +MT1F +NAAA GUF1 +COG3 PTPN4 -ARRDC4 +ABHD14A DAPL1 -C22orf39 -ATPIF1 -SEC22C -MAGED1 -FLCN -TMEM199 +ARRDC4 +QDPR MAP1B -ZSWIM7 -ABL2 -C1orf132 -RHBDD2 -TCF4 -TMED4 -IL20RA -CYB5B -GADD45G -ECD -ZNF428 -RASD1 -PNKD -DCTN3 -ZBTB20 +GATA2 +C22orf39 +APOA1BP diff --git a/genesets/DWS.scStress.txt b/genesets/DWS.scStress.txt index f1602d7f88da2db1bbf5c9af5fe1eb264fb90547..782a5f8126b901440360f5a722d2697717237ebe 100644 --- a/genesets/DWS.scStress.txt +++ b/genesets/DWS.scStress.txt @@ -1,27 +1,12 @@ JUN -GADD45B EGR1 FOS +GADD45B ATF3 HES1 -JUNB IER2 +JUNB ZFP36 NR4A1 DDIT3 -ID1 NFKBIA -FOSB -PPP1R15A -KLF10 -KLF6 -NCOA7 -RHOB -DUSP1 -ID3 -DNAJB1 -BTG2 -IER3 -HSPA1A -IRF1 -GADD45G