diff --git a/bash.scripts/sc_FullAnalysis-D17PrF.sh b/bash.scripts/sc_FullAnalysis-D17PrF.sh
new file mode 100755
index 0000000000000000000000000000000000000000..7ae17f124664759ea06b4ddc78ae02bc215e2122
--- /dev/null
+++ b/bash.scripts/sc_FullAnalysis-D17PrF.sh
@@ -0,0 +1,25 @@
+#!/bin/bash
+#SBATCH --job-name R_FullAnalysis
+#SBATCH -p 128B,256GB,256GBv1,384GB
+#SBATCH -N 1
+#SBATCH -t 7-0:0:0
+#SBATCH -o job_%j.out
+#SBATCH -e job_%j.out
+#SBATCH --mail-type ALL
+#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
+
+module load R/3.4.1-gccmkl
+
+Rscript ../r.scripts/sc_Demultiplex.R --p="D17PrF" --d=3
+Rscript ../r.scripts/sc_Seurat.Score.CellCycle.R --p="D17PrF"
+Rscript ../r.scripts/sc_QC.R --p="D17PrF"
+Rscript ../r.scripts/sc_Cluster.R --p="D17PrF"
+Rscript ../r.scripts/sc_PC.Score.Stress.R --p="D17PrF"
+Rscript ../r.scripts/sc_QuSAGE.Lineage.R --p="D17PrF"
+Rscript ../r.scripts/sc_LineageSubClust.R --p="D17PrF"
+Rscript ../r.scripts/sc_QuSAGE_EpiSubClust.R --p="D17PrF"
+Rscript ../r.scripts/sc_QuSAGE_StSubClust.R --p="D17PrF"
+Rscript ../r.scripts/sc_MergeSubClust.R --p="D17PrF"
+Rscript ../r.scripts/sc_PC.Score.NE.R --p="D17PrF"
+Rscript ../r.scripts/sc_DEG.R --p="D17PrF"
+Rscript ../r.scripts/sc_Tables.R --p="D17PrF"
diff --git a/bash.scripts/sc_FullAnalysis-DPrF-Lin.sh b/bash.scripts/sc_FullAnalysis-DPrF-Lin.sh
deleted file mode 100644
index d9b089baf2fd93fadce5bd8bb778a2e7ef9e2036..0000000000000000000000000000000000000000
--- a/bash.scripts/sc_FullAnalysis-DPrF-Lin.sh
+++ /dev/null
@@ -1,37 +0,0 @@
-#!/bin/bash
-#
-# CREATED USING THE BIOHPC PORTAL on Thu Nov 30 2017 16:16:26 GMT-0600 (Central Standard Time)
-#
-# This file is batch script used to run commands on the BioHPC cluster.
-# The script is submitted to the cluster using the SLURM `sbatch` command.
-# Lines starting with # are comments, and will not be run.
-# Lines starting with #SBATCH specify options for the scheduler.
-# Lines that do not start with # or #SBATCH are commands that will run.
-
-# Name for the job that will be visible in the job queue and accounting tools.
-#SBATCH --job-name R_FullAnalysis
-
-# Name of the SLURM partition that this job should run on.
-#SBATCH -p 256GB,256GBv1       # partition (queue)
-# Number of nodes required to run this job
-#SBATCH -N 1
-
-# Time limit for the job in the format Days-H:M:S
-# A job that reaches its time limit will be cancelled.
-# Specify an accurate time limit for efficient scheduling so your job runs promptly.
-#SBATCH -t 7-0:0:0
-
-# The standard output and errors from commands will be written to these files.
-# %j in the filename will be replace with the job number when it is submitted.
-#SBATCH -o job_%j.out
-#SBATCH -e job_%j.err
-
-# Send an email when the job status changes, to the specfied address.
-#SBATCH --mail-type ALL
-#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
-
-module load R/3.4.1-gccmkl
-
-# COMMAND GROUP 1
-Rscript ../r.scripts/sc_QuSAGE.Lineage.R --p="DPrF"
-# END OF SCRIPT
diff --git a/bash.scripts/sc_FullAnalysis-DPrF.sh b/bash.scripts/sc_FullAnalysis-DPrF.sh
deleted file mode 100755
index 136c5fce9745ed8718ecc248c413fbc29fc42806..0000000000000000000000000000000000000000
--- a/bash.scripts/sc_FullAnalysis-DPrF.sh
+++ /dev/null
@@ -1,50 +0,0 @@
-#!/bin/bash
-#
-# CREATED USING THE BIOHPC PORTAL on Thu Nov 30 2017 16:16:26 GMT-0600 (Central Standard Time)
-#
-# This file is batch script used to run commands on the BioHPC cluster.
-# The script is submitted to the cluster using the SLURM `sbatch` command.
-# Lines starting with # are comments, and will not be run.
-# Lines starting with #SBATCH specify options for the scheduler.
-# Lines that do not start with # or #SBATCH are commands that will run.
-
-# Name for the job that will be visible in the job queue and accounting tools.
-#SBATCH --job-name R_FullAnalysis
-
-# Name of the SLURM partition that this job should run on.
-#SBATCH -p 256GB,256GBv1       # partition (queue)
-# Number of nodes required to run this job
-#SBATCH -N 1
-
-# Time limit for the job in the format Days-H:M:S
-# A job that reaches its time limit will be cancelled.
-# Specify an accurate time limit for efficient scheduling so your job runs promptly.
-#SBATCH -t 7-0:0:0
-
-# The standard output and errors from commands will be written to these files.
-# %j in the filename will be replace with the job number when it is submitted.
-#SBATCH -o job_%j.out
-#SBATCH -e job_%j.err
-
-# Send an email when the job status changes, to the specfied address.
-#SBATCH --mail-type ALL
-#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
-
-module load R/3.4.1-gccmkl
-
-# COMMAND GROUP 1
-Rscript ../r.scripts/sc_Demultiplex.R --p="DPrF" --d=7
-#Rscript ../r.scritps/sc_D-SampleReorder.R
-#Rscript ../r.scripts/sc_Seurat.Score.CellCycle.R --p="DPrF"
-Rscript ../r.scripts/sc_QC.R --p="DPrF" --cc=FALSE
-Rscript ../r.scripts/sc_Cluster.R --p="DPrF"
-Rscript ../r.scripts/sc_PC.Score.Stress.R --p="DPrF"
-#Rscript ../r.scripts/sc_QuSAGE.Lineage.R --p="DPrF"
-#Rscript ../r.scripts/sc_LineageSubClust.R --p="DPrF"
-#Rscript ../r.scripts/sc_QuSAGE_EpiSubClust.R --p="DPrF"
-#Rscript ../r.scripts/sc_QuSAGE_StSubClust.R --p="DPrF"
-#Rscript ../r.scripts/sc_MergeSubClust.R --p="DPrF"
-#Rscript ../r.scripts/sc_PC.Score.NE.R --p="DPrF"
-#Rscript ../r.scripts/sc_DEG.R --p="DPrF"
-#Rscript ../r.scripts/sc_Tables.R --p="DPrF"
-# END OF SCRIPT
diff --git a/bash.scripts/sc_FullAnalysis-Pr.sh b/bash.scripts/sc_FullAnalysis-Pr.sh
deleted file mode 100755
index 3e4c5769ed36e8f108c8ecec5bb9f2e7df71e78c..0000000000000000000000000000000000000000
--- a/bash.scripts/sc_FullAnalysis-Pr.sh
+++ /dev/null
@@ -1,26 +0,0 @@
-#!/bin/bash
-#SBATCH --job-name R_FullAnalysis
-#SBATCH -p 128B,256GB,256GBv1,384GB
-#SBATCH -N 1
-#SBATCH -t 7-0:0:0
-#SBATCH -o job_%j.out
-#SBATCH -e job_%j.out
-#SBATCH --mail-type ALL
-#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
-
-module load R/3.4.1-gccmkl
-
-Rscript ../r.scripts/sc_Demultiplex.R
-Rscript ../r.scritps/sc_D-SampleReorder.R
-Rscript ../r.scripts/sc_Seurat.Score.CellCycle.R
-Rscript ../r.scripts/sc_QC.R
-Rscript ../r.scripts/sc_Cluster.R
-Rscript ../r.scripts/sc_PC.Score.Stress.R
-Rscript ../r.scripts/sc_QuSAGE.Lineage.R
-Rscript ../r.scripts/sc_LineageSubClust.R
-Rscript ../r.scripts/sc_QuSAGE_EpiSubClust.R
-Rscript ../r.scripts/sc_QuSAGE_StSubClust.R
-Rscript ../r.scripts/sc_MergeSubClust.R
-Rscript ../r.scripts/sc_PC.Score.NE.R
-Rscript ../r.scripts/sc_DEG.R
-Rscript ../r.scripts/sc_Tables.R